Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00952 ATGGCAAGACGAGCACTGTCAAGAAGAGAGGTCCTCCATACAAATTTTCTTACCCCGCCTGTCTCGAAAGAGTCTATGATAGCTATAGGAAAACTAGCCGATACAAAAGCGATTGTTCAGGGAGGATATCCACAGGCTGAACGATGTCGAATTTCTGTTGGACATCCAGATGACTTGACAAGCGATCCAGATATAATTGCAGCATTGAGTATTACAGGCAACTTTGGATTTCAATCATGTTCACATGGGGACTTTCTTGGGTCAATTCTTGGTACAGGAATTGCTAGAGAGAAAGTTGGCGATATCCTCTTGCAGGGAAAGAGTGCACAAGTCCTAATTGTTCCTGAACTTGTTGACTTCCTTACATCATCATTGGACAAGGTTGGCAATGTTCCTGTTTATTGTACAAGAATACCATTGAATTCTCTTGATTATGAACCACCACAAACAAAGTCATTTAAAACCGTAGAATCGTCCCTAAGAGTGGATGCTCTAGCCAGTGCAGGATTTAAGATTTCACGATCAAAATTAGTGGAGATGATTAGCAATGGCGACGTTCGAGTCAACTGGACACCCGTGACTAAAAATGGAGCGGCTCTCAAGTCAGGCGATATGGTTTCTGTCAGCGGAAAAGGAAGACTAAAGATTGGAGAAATAAACTCTACGAAGAAAGGGAAATTCGCTGTCGAGCTCATTCGATACCTTTAA 708 42.23 MARRALSRREVLHTNFLTPPVSKESMIAIGKLADTKAIVQGGYPQAERCRISVGHPDDLTSDPDIIAALSITGNFGFQSCSHGDFLGSILGTGIAREKVGDILLQGKSAQVLIVPELVDFLTSSLDKVGNVPVYCTRIPLNSLDYEPPQTKSFKTVESSLRVDALASAGFKISRSKLVEMISNGDVRVNWTPVTKNGAALKSGDMVSVSGKGRLKIGEINSTKKGKFAVELIRYL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40629150 40632781 - Bma010047.1 Bma13g00952 93681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00952 235 Gene3D - 62 144 IPR012677 -
Bma13g00952 235 CDD S4 161 215 - -
Bma13g00952 235 ProSiteProfiles S4 RNA-binding domain profile. 160 220 - -
Bma13g00952 235 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 1 235 - -
Bma13g00952 235 SMART s4_6 160 220 IPR002942 GO:0003723
Bma13g00952 235 SUPERFAMILY Alpha-L RNA-binding motif 39 223 - -
Bma13g00952 235 Pfam Putative RNA-binding domain in YlmH 67 141 IPR040591 -
Bma13g00952 235 Gene3D - 154 211 IPR036986 GO:0003723
Bma13g00952 235 Pfam S4 domain 164 206 IPR002942 GO:0003723
Bma13g00952 235 TIGRFAM PS_II_S4: photosystem II S4 domain protein 1 233 IPR017506 -
Bma13g00952 235 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 1 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00952 - - - fve:101301096 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00948 Bma-Chr13:40427811 Bma13g00952 Bma-Chr13:40629150 7.86E-173 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00952 Bma_Chr13 FPKM 12.030736 12.505754 5.805145 7.025176 5.285719 5.110332 6.015954 15.608568 16.093935 18.61974