Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00954 ATGGCGGATTCTTCAAATTCTGCCTGCCAGAAGTCTGGGAATACTTCCAGAATCTCAAACAGAAATCCAAAGCCACTCCACAGACCTAATTCTAACTTATATAATATTTATGGTTCTAGAGAGAGAGAGACTGCTGAATTGGCTGATACAGATAACCATATAAACCAGTGTGGTTTATCTGGGATTTACAAGGACGAAATAGGAGTAGACCCTTATGCTGATATCGAAAAATGGGGCGATCTTAGTTTGAGGCAATGGCTCGATAAACCCGAAAGACATGTCGATTCATCCGAATCTCTTCATATATTTAAGCAAATAGTCGAGATTATCAATCTTGCACATTCACAGGGAATTGTTGTTCATAATGTCCGTCCTTCGTGCTTCGTAATGTCTTCTTTTAACCACGTCTCCTTCATTGAATCCGCTTCGTGTTCGGATTCCGGCGGAGATTCGCCGAAAGATGGTGAAAATAGCGAAGCTTTGGACGGTCAAAATGAGTCGTTGCCATTGCCAAGAAGCATGGGAGGTGATACAAGTCTTCAACTTTGTACCTCTTCAACAATTTCTCTATCTGAAGCTAGTTGTATGCAATCAAATTCGTATAAACTATCGTTAGTCGAAGAGGCCGAGAAAGATCGAATACGAACTACAAATGCAGAAGAAAAACAAGAAAATAAGCAACAACTTCCATTAAAACAGATATTGGTTATGGAGGCTTGTTGGTATACTAGTCCTGAGGAGGCTTCTGGTGGCCAAAGTTCGTTTTCCTCGGACGTATATCAATTAGGCGTTCTTCTTTTTGAGTTATTCTGTTCCTTCAGCTCTAGAGAAGAGAAGAGCAGAACCATGTCGAGCCTGAGACATCGAGTTCTTCCTCCTCAATTGCTGTTGAAATGGCCAAAGGAAGCTTCGTTTTGCCTTTGGTTGTTGCATCCAGACCCAAATAGTCGACCAAAGCTGAGCGAATTGTCACAGACTGACTTCCTTAACGAGCAGAAAGATGAGATAGAGAATCGAGAATCAGCAATCGAGATCCGAGAAAAAATAGAGGAGCAAGAGCTGCTCCTAGAAATCCTTCTGCTCATACAACAAAGAAAACAGGAGGCTTCCAAGAAGTTGCAAGACAGTATTACTTTATTGTGCTCTGACATAGAAGAAGTTACAAATCACCAATCGTATCTCCAGCAAAATAGTACTTTTGGTTCCGAGCTCGGAATAGAAGACCGATTAGCATCAGTTCTTCCTTCTGCGAGTGTTGTTGAAAATGACGAATCCGTCAGCTTGGGGTGTAGGAAAAGAGTTAGGCCAAGAATCGCTGAAAATGAAACAGGAGTTGTCGGAAGTGAAAATGAAAAGGAAAAATTGCACATAATTGGTAAAAATAGAGAAAGCTATCTCTCTGGAAGTTCTAGATTGATGAAACATTTCAAGAACTTGGAATTGGCTTACATTTCTATGAGATGTCAGCCAAACAAGCCCCAAGAAAAACAGTCGGTCCGGCATTCATCAGTTTGTAACAATGGCAAAGGGTCAATTACCACAGAGAAAAGTTCTGTTTATGATTTGGTATTTAAGCTACCAGAGGAGAGTAGAAAAGGTGGTTGGATAAATCCTTTCCTTGAAGGCTTATGCAAATATCTAACCTATAATAAGTTGAAAATTAAGGCAGATGTGAAGCATGGAGATCTCTCAAGCTCTTCCAACCTTGTATGTTCACTCGGATTCGATCGTGATGGGGAATTTTTTGCCACTGCTGGAGTAAATAAGAAGATTAAAGTCTTTGAATACAATCCCATCATAAACGAAGAGCATAATATCCATTACCCAGTTGTTGAAATGGCCAGCGATTCCAAATTAAGCAGTGTCTGTTGGAACAGTTACATTAAAAGCCAAATCGCTTCGAGTAATTTTGCTGGTGTTGTTCAAGTATGGGATGTTTCAAGAAGACAATTGTTAACGGAAATGAAAGAACACGAGAGACGAATTTGGTCTATCGACTTCTCATCAGCAGATCCAATGATGTTAGCAAGTGGAAGTGACGATGGGTCCGTTAAGCTATGGAGTATCAATCAGGGAGCAAGTATTGGCACCATTAAAACAAAAGCTAATGTCTGCTGTGTTCAGTTTCCCACGGATTCTAGCCGTTCAATCGCGTTTGGCTCGGCAGATCATAGAATTTATTATTATGATTTGAGAAATATGAGAGCTCCATTGTGCAGTTTTGTTGGACACAATAAGACTGTGAGTTATGTCAAGTTTGTAGATTCAACCAATCTCGTTTCTGCATCAACTGATAACACCTTGAAGCTTTGGGACTTGTCGAAGTGTATGTCTCGGGTAGTCGACACTCCACTTCAATCATTTACTGGCCATGTTAATGGGAAGAACTTTGTGGGTTTATCTGTCTCAGATGGTTATATTGCTACAGGTTCAGAGACTAATGAGGTTTTCATCTACCACAAAGCGTTCCCAATGCCGTCTTTATCGTTCAAGTTTCAGAGAGACCCGTTTTCTCTTCTGGAAACGGACGAATCATCCCAGTTTATCTCCTCCGTTTGCTGGCGCCGGCAGTCGGCCACATTGGTCGCTGCAAATTCAGCCGGCAGTATCAAGATTTTAGAGATGGCATAG 2631 41.09 MADSSNSACQKSGNTSRISNRNPKPLHRPNSNLYNIYGSRERETAELADTDNHINQCGLSGIYKDEIGVDPYADIEKWGDLSLRQWLDKPERHVDSSESLHIFKQIVEIINLAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGGDSPKDGENSEALDGQNESLPLPRSMGGDTSLQLCTSSTISLSEASCMQSNSYKLSLVEEAEKDRIRTTNAEEKQENKQQLPLKQILVMEACWYTSPEEASGGQSSFSSDVYQLGVLLFELFCSFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPNSRPKLSELSQTDFLNEQKDEIENRESAIEIREKIEEQELLLEILLLIQQRKQEASKKLQDSITLLCSDIEEVTNHQSYLQQNSTFGSELGIEDRLASVLPSASVVENDESVSLGCRKRVRPRIAENETGVVGSENEKEKLHIIGKNRESYLSGSSRLMKHFKNLELAYISMRCQPNKPQEKQSVRHSSVCNNGKGSITTEKSSVYDLVFKLPEESRKGGWINPFLEGLCKYLTYNKLKIKADVKHGDLSSSSNLVCSLGFDRDGEFFATAGVNKKIKVFEYNPIINEEHNIHYPVVEMASDSKLSSVCWNSYIKSQIASSNFAGVVQVWDVSRRQLLTEMKEHERRIWSIDFSSADPMMLASGSDDGSVKLWSINQGASIGTIKTKANVCCVQFPTDSSRSIAFGSADHRIYYYDLRNMRAPLCSFVGHNKTVSYVKFVDSTNLVSASTDNTLKLWDLSKCMSRVVDTPLQSFTGHVNGKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPSLSFKFQRDPFSLLETDESSQFISSVCWRRQSATLVAANSAGSIKILEMA 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40684466 40688567 - Bma010053.3 Bma13g00954 93683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00954 876 Gene3D Transferase(Phosphotransferase) domain 1 80 341 - -
Bma13g00954 876 Coils Coil 206 226 - -
Bma13g00954 876 PRINTS G protein beta WD-40 repeat signature 759 773 IPR020472 -
Bma13g00954 876 PRINTS G protein beta WD-40 repeat signature 632 646 IPR020472 -
Bma13g00954 876 PRINTS G protein beta WD-40 repeat signature 675 689 IPR020472 -
Bma13g00954 876 SMART WD40_4 648 688 IPR001680 GO:0005515
Bma13g00954 876 SMART WD40_4 606 645 IPR001680 GO:0005515
Bma13g00954 876 SMART WD40_4 734 772 IPR001680 GO:0005515
Bma13g00954 876 SMART WD40_4 691 730 IPR001680 GO:0005515
Bma13g00954 876 SMART WD40_4 781 820 IPR001680 GO:0005515
Bma13g00954 876 SMART WD40_4 836 874 IPR001680 GO:0005515
Bma13g00954 876 SMART WD40_4 556 595 IPR001680 GO:0005515
Bma13g00954 876 SMART serkin_6 5 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00954 876 SUPERFAMILY Protein kinase-like (PK-like) 41 334 IPR011009 -
Bma13g00954 876 Gene3D - 541 876 IPR015943 GO:0005515
Bma13g00954 876 ProSiteProfiles Protein kinase domain profile. 1 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00954 876 ProSitePatterns Trp-Asp (WD) repeats signature. 759 773 IPR019775 -
Bma13g00954 876 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 741 774 - -
Bma13g00954 876 PANTHER PROTEIN SPA1-RELATED 3 1 875 - -
Bma13g00954 876 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 697 IPR001680 GO:0005515
Bma13g00954 876 Pfam WD domain, G-beta repeat 650 688 IPR001680 GO:0005515
Bma13g00954 876 Pfam WD domain, G-beta repeat 737 772 IPR001680 GO:0005515
Bma13g00954 876 MobiDBLite consensus disorder prediction 143 172 - -
Bma13g00954 876 MobiDBLite consensus disorder prediction 1 31 - -
Bma13g00954 876 SUPERFAMILY WD40 repeat-like 563 873 IPR036322 GO:0005515
Bma13g00954 876 ProSiteProfiles Trp-Asp (WD) repeats profile. 741 774 IPR001680 GO:0005515
Bma13g00954 876 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 692 - -
Bma13g00954 876 PANTHER PROTEIN SPA1-RELATED 2 1 875 IPR044630 GO:0009640
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00954 - - - zju:107422445 1110.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma13g00954 Bma14g00239 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00954 Bma-Chr13:40684466 Bma14g00239 Bma-Chr14:2885522 0 dispersed
Bma13g00954 Bma-Chr13:40684466 Bma15g00557 Bma-Chr15:6406443 1.96E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00954 Bma_Chr13 FPKM 0.725712 0.470649 0.816315 0.867039 1.597917 0.925926 0.972702 1.435304 1.377882 1.636154