Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00961 GAGAGAACCGTGGAGGAAGAAGTTGAAAAACTGAAAGAAGAAGTGAAGAACATGTTGATAGCTCCTGTGGAGAGCCCCATGCAGAAACTAGGTTTGATTGATTCAATCCAGCGGTTAGGAGTTTCCTATCATTTCCAATCCGAGATTGGAACATTGTTGGAACAAATCTTCAAGAATGATGTTGATTCGAAAAGTAATGATAATAGGTTAAATCTTTACTACGACTCCCTCATGTTTCGCTTGCTTAGGCAAGAGGGTTTCCATATTTCATCAGATATCTTCAACAAATTCAAAGATGCTGAAGGAAAGTTTAAAGCCGAAATTGCAGAGGACCCAAGAGGATTGTTGAGCTTGTATGAAGCAGCAAACTACAGCTTACATGGAGAGTGTATACTTGATGAAGCACTGGTTTTTGCAAGAGAAAAGTTGGAAGCCATGGCAGGTTTGTTAAGCCCTCAGGCTACTGAGGAAATAACTTATGCTCTAAAGTTTCCTCTTCGACGAAGTGCACCAAGAATTGAAGCACGACACTTCATGTCAGCTTACGAAGCAAATTCTTATCCCAACAAAAATCTACTTACCTTTGCGAAATTGGATTTTAACATACTCCAGAAACTTCACCAACAAGAAATTGGAGAAGTCTCAAGGTGGTGGAAGGATGTGGATTTGTCGAGTAAGCTACATTTCGCACGAGATAGAATTGTTGAATGTTACTTTTGGTCTCTAATCGCCATACCTGAACCACAGTTCTCTATTTCACGAATGTTTGTTGCAAAGGTGACACAAATGACATCAATCATGGATGATATATATGATCTTCATGGCACCTATGAAGAAATTCAGCTGTTGACTGATGCCGTTGAGAGGTGGGATATCAACATGAAAAACAATCTCCCGAACTACCTTCAAGTTTATTATGAAGCATTATTGAATCTTTACGTAGATATTGGAAGAGACTTGGGCATCAGTGGAGAATCATTTAGGATGAAATGCACAAAAGAAGCAATGAAGAGAAATGCCAAGGCGCACTTTGGTGAAGCTCAATGGTTCCATAAAAGAGTGACACCAACCATTGATGAGTATTATGAGTTTGCACTTACAACGAGCTGCTATCCTTTGTTCGTGACGTCCGCTTACCTTTGCATGGGAGATGTTGTTCCAAATGAAGCTTTTGAATGGATTATGGAGAATCCAAAGATCCTTGAGGCTACAAATGTGATCGGCCGACTAATGAATGACTTGGTCTCCAACGAGTTTGAGCAAGGCCTAGGTCACAGTGCATCTTCAATAGAGTCCTACATAAAACAATTCTATGTTTCAAGAGAAGTTGCATGCGATGCTTTAAGAAAGCGAATAGAAGATGCATGGAAGGACATAAACCAGTGTTCGATGACACCTCTTGAGTTTCTCAAGGCAGTGCTTTTGCCTATAATAAACTATGCCCGTGCAAGCCATGTTATCTACGTAGACGGCGATGGATATACCATAGTGGCAGGAGCGACTAAGCATTATATCACTTCTCTCCTTGTTGATCAAATTTCACTTTGA 1548 40.31 ERTVEEEVEKLKEEVKNMLIAPVESPMQKLGLIDSIQRLGVSYHFQSEIGTLLEQIFKNDVDSKSNDNRLNLYYDSLMFRLLRQEGFHISSDIFNKFKDAEGKFKAEIAEDPRGLLSLYEAANYSLHGECILDEALVFAREKLEAMAGLLSPQATEEITYALKFPLRRSAPRIEARHFMSAYEANSYPNKNLLTFAKLDFNILQKLHQQEIGEVSRWWKDVDLSSKLHFARDRIVECYFWSLIAIPEPQFSISRMFVAKVTQMTSIMDDIYDLHGTYEEIQLLTDAVERWDINMKNNLPNYLQVYYEALLNLYVDIGRDLGISGESFRMKCTKEAMKRNAKAHFGEAQWFHKRVTPTIDEYYEFALTTSCYPLFVTSAYLCMGDVVPNEAFEWIMENPKILEATNVIGRLMNDLVSNEFEQGLGHSASSIESYIKQFYVSREVACDALRKRIEDAWKDINQCSMTPLEFLKAVLLPIINYARASHVIYVDGDGYTIVAGATKHYITSLLVDQISL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40882863 40885208 + Bma010063.1 Bma13g00961 93690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00961 515 Pfam Terpene synthase family, metal binding domain 193 458 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bma13g00961 515 Gene3D - 24 188 IPR036965 GO:0010333|GO:0016829
Bma13g00961 515 PANTHER TERPENE SYNTHASE 2-RELATED 4 494 - -
Bma13g00961 515 Coils Coil 1 21 - -
Bma13g00961 515 PANTHER OS04G0344100 PROTEIN-RELATED 4 494 - -
Bma13g00961 515 SFLD Terpene Cyclase Like 1 C Terminal Domain 189 514 IPR034741 -
Bma13g00961 515 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 4 185 IPR008930 -
Bma13g00961 515 Pfam Terpene synthase, N-terminal domain 3 162 IPR001906 GO:0010333|GO:0016829
Bma13g00961 515 SUPERFAMILY Terpenoid synthases 189 512 IPR008949 -
Bma13g00961 515 CDD Terpene_cyclase_plant_C1 17 512 IPR044814 GO:0010333|GO:0016102
Bma13g00961 515 Gene3D Farnesyl Diphosphate Synthase 3 503 IPR008949 -
Bma13g00961 515 SFLD Isoprenoid Synthase Type I 189 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00961 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 jre:109018572 503.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00763 Bma-Chr13:25265001 Bma13g00961 Bma-Chr13:40882863 0 dispersed
Bma13g00950 Bma-Chr13:40577149 Bma13g00961 Bma-Chr13:40882863 0 dispersed
Bma13g00961 Bma-Chr13:40882863 Bma13g00965 Bma-Chr13:41269944 0 dispersed
Bma15g00601 Bma-Chr15:7586302 Bma13g00961 Bma-Chr13:40882863 3.65E-21 dispersed
Bma13g00961 Bma-Chr13:40882863 Bma13g00962 Bma-Chr13:41003393 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g402 Blo03g00603 . . . . . . Bma13g00961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02683 . . . . . . . . . . . . Cma16g00829 . . Cpe14g00716 . . . . . . . . . . . . . . . Lsi05g00658 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00961 Bma_Chr13 FPKM 29.261265 30.737106 26.880688 27.869925 31.358742 27.679562 31.406092 27.777803 28.434303 26.407951