Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01010 ATGGGAGGCGGGGTCATGAGAACGGCGGCAAAGGTGGCCGGAGTTGGAGTCGTCACCGGTGGTCTTCGCGGCGTACCGGCCGTTCCAGTGGCGGAGCAATCGCTGCGCGGCCCCTCGAGGTCTGTGTCACCTCCGCTTACTTCTAAGGCTACTGCGGGTTCTGAGATGAGGGTGATACAGAGACCGGCTTGGGAGATCAATGACTGGGAGTTCGCCGGCGTGGAGGAGCAGGTCGGGGAGCCGCTGCCTAGAGTTGTGTTCTCCGCCGTTCCGAACTTTCAAGAGGCAAAGGACGCCACTATGGAACTAAAGGAGGCTCTCGATAAGGTTTATCTGTCTTCACCAAATTCCTCTGAAACTGGCGATTCATCATCTGTTTGCATTCCTGAAATGGAGACAAAGTCTTGTCTTCTAAGTAGTCAGAATTCTAGAGCATCTGAACATGCTCTTCATGCCTTCAGATTGCTTAATGAAAGCCCCAAAATTCAGAATGTTGTAGCCTCAATTGTTTCTGATTCTAATGTCTGGAAAGCAATTTCTGAAAATCCTGAGCTTAAGAGTTACATGGGGTCATACCAGACTGATGGGAAGGAGGCTCTCTCTTTTGAAGACTCTCATTTTCATGAAGATTCAGCGAAGATTGAAGATGTTTCTGATGAAAATCCATCTGGGGGCTTTGAAAATGGCTTCATAAATGAGCTGAAGAACTTGGGAAATAAAGTTTCTGTCATGGTGAGTAATCTGCAGAATTATATTCTAAACCTCTTTGGATTTTCAGCCTCGGAGGACAAACCTACTGATAATGACGAAAACTCAATGGATTGGAATTTGGTCGGATCGTCCATCATGGGATTGGCTGTTCTGGTTGTCATGGTCGTCATCGTGAAGCGAGTGTAA 897 47.71 MGGGVMRTAAKVAGVGVVTGGLRGVPAVPVAEQSLRGPSRSVSPPLTSKATAGSEMRVIQRPAWEINDWEFAGVEEQVGEPLPRVVFSAVPNFQEAKDATMELKEALDKVYLSSPNSSETGDSSSVCIPEMETKSCLLSSQNSRASEHALHAFRLLNESPKIQNVVASIVSDSNVWKAISENPELKSYMGSYQTDGKEALSFEDSHFHEDSAKIEDVSDENPSGGFENGFINELKNLGNKVSVMVSNLQNYILNLFGFSASEDKPTDNDENSMDWNLVGSSIMGLAVLVVMVVIVKRV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42397349 42399138 + Bma010132.1 Bma13g01010 93739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01010 298 PANTHER OS08G0179900 PROTEIN 1 297 - -
Bma13g01010 298 PANTHER OS08G0179900 PROTEIN 1 297 - -
Bma13g01010 298 MobiDBLite consensus disorder prediction 34 53 - -
Bma13g01010 298 MobiDBLite consensus disorder prediction 36 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01010 - - - qsu:112025576 240.736
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g390 . . . . Bpe09g00202 . . Bma13g01010 . . Cma01g01166 Cma09g00913 . Car09g00829 Sed01g3741 Cpe06g00734 Cpe02g00736 Bhi09g01968 Tan01g4480 Cmetu09g1115 . Hepe01g1329 Mch11g1132 . . . . . . . . . Cone9ag0117 . . Lsi04g01259 . Chy04g01033 . Blo07g00926 Blo10g00792 . Bda12g00879 . . . . . Cmo01g01221 Cmo09g00906 . . . Car16g00579 . . . . . . . . . Cla05g01558 Cam05g1665 Cec05g1670 Cco05g1710 Clacu05g1660 Cmu05g1553 Cre05g1665 . . . Cme04g00773
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007247 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01010 Bma_Chr13 FPKM 4.739234 4.878639 0.0 0.308513 11.734914 14.944904 12.349365 0.0 0.0 0.0