Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01020 ATGGCTGCCATTGCTGCGCTTCAGAGCTCCATGACCTCTCTTTCCCTCTCCTCCAACTCGTTCTTGGGCCAGAGATTTTCCCCTTTCTCTGTCTCGTCTTCTCCGGTTTGTTCCCTTCTCTCAGACCCTCTCCCCATTCCTTGTGCCATTTTCACTCGTAGAATACATCTAAAACGATGGGAGCGGAAAGAATGCAAGCCAAACAGCCTTCCGGTGCTACACAAAATGCATGTTAAGCTCGGAGACACGGTGAAGGTGATAACGGGACGCGATAAGGGTAAAACTGGGGAAATTACGAAAATCTTTAAACATAATAGCACTGTGGTCATAAAAGATCTGAACTTGAAGACCAAGCATGTCAAGAGCAGGGAAGAAGGTGAAAAAGGACAGATCATTAAGATTGAAGCACCAATTCACAGTTCGAATGTGATGCTTTATTCTAAGGAAAAGAATGTGGCAAGTCGAGTGGGTCATAAAATCCTTGAAGATGGAAAACGGGTTCGATACCTCGTCAAAACGGGCGAAATTATCGACGATGCGGAAAACTGGAAGAAACTAAAAGAAAGCAAGGAAAAAACTAAGGTAGCTACCACTTCGTGA 600 44.67 MAAIAALQSSMTSLSLSSNSFLGQRFSPFSVSSSPVCSLLSDPLPIPCAIFTRRIHLKRWERKECKPNSLPVLHKMHVKLGDTVKVITGRDKGKTGEITKIFKHNSTVVIKDLNLKTKHVKSREEGEKGQIIKIEAPIHSSNVMLYSKEKNVASRVGHKILEDGKRVRYLVKTGEIIDDAENWKKLKESKEKTKVATTS 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42780750 42782925 + Bma010148.2 Bma13g01020 93749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01020 199 SMART kow_9 77 104 IPR005824 -
Bma13g01020 199 CDD KOW_RPL26 81 145 IPR041988 GO:0003723
Bma13g01020 199 ProSitePatterns Ribosomal protein L24 signature. 81 98 IPR005825 GO:0003735|GO:0005840|GO:0006412
Bma13g01020 199 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 4 196 - -
Bma13g01020 199 TIGRFAM rplX_bact: ribosomal protein uL24 75 177 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bma13g01020 199 Pfam KOW motif 81 111 IPR005824 -
Bma13g01020 199 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 4 196 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bma13g01020 199 SUPERFAMILY Translation proteins SH3-like domain 74 176 IPR008991 -
Bma13g01020 199 Hamap 50S ribosomal protein L24 [rplX]. 76 172 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bma13g01020 199 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 113 177 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bma13g01020 199 Gene3D - 71 176 IPR014722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01020 K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24 - jre:109014328 273.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00954 Bma-Chr6:45834858 Bma13g01020 Bma-Chr13:42780750 2.56E-13 dispersed
Bma13g01011 Bma-Chr13:42408393 Bma13g01020 Bma-Chr13:42780750 5.16E-48 dispersed
Bma13g01014 Bma-Chr13:42521767 Bma13g01020 Bma-Chr13:42780750 2.67E-47 dispersed
Bma13g01016 Bma-Chr13:42549496 Bma13g01020 Bma-Chr13:42780750 1.33E-09 dispersed
Bma13g01019 Bma-Chr13:42760365 Bma13g01020 Bma-Chr13:42780750 1.45E-110 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g407 . . . . Bpe09g00201 . . Bma13g01020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00800 . Bda12g00881 . . . . . . . . . . . Cpe14g00712 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012446 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01020 Bma_Chr13 FPKM 11.084712 13.28488 10.351972 10.455914 8.37898 6.913417 8.68306 14.332006 13.638692 14.024035