Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01026 ATGGTTTCGCCGGAAAACACCAATTGGCTCTTTGATTACGGATTGATCGACGATATTCCGGTCCCGGATTCTGCTTTCCCTGTCTCGAATTCCGGTTTCTCTTGGCCTGTGACGGCTCTCAATGGCTCCTCCAGTGTCAGTTTGGAAATTGATGGATCATTGGGAGAACAAGATGGACTGAAGGAATCTGGCTCAAAAAAGAGAGTTAGAACTGAATCCAGTTGTGCAACTAGCTCCAAGGCATGTAGGGAGAAGTTGCGCAGGGACAGGCTGAACGACAAGTTTCTAGAATTGGGTGCTATATTGGAGCCTGGAAGGCCACCCAAAACAGATAAGGCTGCTGTATTGAACGATGCCATCCGAATGGTAACCCAAATGAGGACCGAAGCCCAGAAGCTGAAAGACTCAAATTCAAGTCTGCAGGAAAAAATCAAAGAGCTGAAGGTCGAGAAAAATGAGCTTCGTGATGAGAAACAGAGGTTAAAGGGAGAGAAGGAGAAGCTGGAGCAACAAATGAAATCCTTGAATACAACCCCAAGTTTCTTGTCTTCCCCTCCTGCAATTCCAGCTGCATTTGCTGCACCTGGCCAAGTTCCAGGAAATAAGTTGGTGCCATTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCAACTTCAGTTGACACATCACAGGATCACGTCCTCCGACCTCCAGTCGCTTAA 711 47.68 MVSPENTNWLFDYGLIDDIPVPDSAFPVSNSGFSWPVTALNGSSSVSLEIDGSLGEQDGLKESGSKKRVRTESSCATSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAVLNDAIRMVTQMRTEAQKLKDSNSSLQEKIKELKVEKNELRDEKQRLKGEKEKLEQQMKSLNTTPSFLSSPPAIPAAFAAPGQVPGNKLVPFISYPGVAMWQFMPPTSVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42866561 42868291 + Bma010154.5 Bma13g01026 93755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01026 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Bma13g01026 236 CDD bHLH_AtILR3_like 80 155 - -
Bma13g01026 236 SMART finulus 81 132 IPR011598 GO:0046983
Bma13g01026 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Bma13g01026 236 Coils Coil 116 178 - -
Bma13g01026 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Bma13g01026 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983
Bma13g01026 236 MobiDBLite consensus disorder prediction 54 77 - -
Bma13g01026 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bma13g01026 236 Gene3D - 76 152 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g01026 Bma14g00357 CCT
Bma07g01316 Bma13g01026 CCT
Bma13g01026 Bma14g00357 ECH
Bma07g01316 Bma13g01026 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00325 Bma-Chr7:4200370 Bma13g01026 Bma-Chr13:42866561 1.50E-94 dispersed
Bma07g00327 Bma-Chr7:4272573 Bma13g01026 Bma-Chr13:42866561 1.29E-90 dispersed
Bma12g00554 Bma-Chr12:23076784 Bma13g01026 Bma-Chr13:42866561 4.07E-20 dispersed
Bma06g01596 Bma-Chr6:52160053 Bma13g01026 Bma-Chr13:42866561 5.64E-24 transposed
Bma13g01063 Bma-Chr13:43338811 Bma13g01026 Bma-Chr13:42866561 9.00E-103 transposed
Bma13g01026 Bma-Chr13:42866561 Bma14g00357 Bma-Chr14:4355988 3.74E-121 wgd
Bma13g01026 Bma-Chr13:42866561 Bma07g01316 Bma-Chr7:48705388 2.20E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58260 PF00010 HLH 9.60E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01026 - - zju:107431674 378.252