Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01027 ATGGCGTCCAATCTTCATCTGATTCATGTACAAATTTGTAAACCCCTGAACCCATTATCATCATTGTCGCTCCCTACAACTTCTGCCTTTCCTTTTTCTTTCCCCGCGAACCAAAAACGCCAGACCCAGAAGTTCAATATAGACTACCGTCCGGCAATTCTAACGCGAAAGTGCAGAACCCATTTACTGGTTCCTCATTCTGCGCTATCTTCTTCCTCGCCACCAAAATCAAAAGAAGAATCCACTTCTCAGGCGAAGACTTGCCTCTCCAATTGCTTAGAAAAACCCATTAATAATCTTAAACTGGCAGGTAAGCTCAAGAAATCGAAACAGCCCAGATTTCGAGTGGAAATCCCACTTGTGGATGACTCTCCAGCTTCCTTGTCTCAACTCGCGTTTGAGGTATTTGGAAATCTACCCATTAAGAGAAAAGGGTCTGTAATCAAAGTCTTAATCCTCTGGCCTAATCTCACTTTAGCAGAATCCGCCGTTAAAGTATTCGAATCTTGTTCTTCTAACCAGCTTCAGCACCTACACCTGGATATTCCTTCTGTTATTTCCGCCGACTGCAAAATTTTGAGTTCTTCTGATTTTGCTGTGTTCTTAACGCCAGATTCCTCCCAATTGGAAAAAATGAAAATGGTTGCTGAAGCTATGTATCCAAAACCAGTGGTGATCTTTAACCCCAAATGGATGTTTGAGGATGAGGGTGATTTTGGTGGAATGAGTAGCTTTGTTCGTTCATTTGAAGTAATTTATTCATTCATGGGTTTGGAAGTTAGAGGGATATTGAATAAGAGAAAGGGAGCAATTTTCAAGTGTGTTAGAGATGGGGTTCTGAGTGGTGAGAAGTGGAATGTTTTCGTCGAGGAAGAAGAGTTAAAACTGGTTTCGAAATTCTCTTCGAGACCATCTATTGCGGAAGTTGAGAATGTTTTGTACAACATGATGGCTATGAATTCCCCTATCACAAAATCAGCTAAGTTCTTGAGAGGATTAGTGTCAAATGTAACTGGGAAAAAGTAA 1026 41.03 MASNLHLIHVQICKPLNPLSSLSLPTTSAFPFSFPANQKRQTQKFNIDYRPAILTRKCRTHLLVPHSALSSSSPPKSKEESTSQAKTCLSNCLEKPINNLKLAGKLKKSKQPRFRVEIPLVDDSPASLSQLAFEVFGNLPIKRKGSVIKVLILWPNLTLAESAVKVFESCSSNQLQHLHLDIPSVISADCKILSSSDFAVFLTPDSSQLEKMKMVAEAMYPKPVVIFNPKWMFEDEGDFGGMSSFVRSFEVIYSFMGLEVRGILNKRKGAIFKCVRDGVLSGEKWNVFVEEEELKLVSKFSSRPSIAEVENVLYNMMAMNSPITKSAKFLRGLVSNVTGKK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 42870294 42871319 + Bma010155.1 Bma13g01027 93756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01027 341 Pfam Domain of unknown function (DUF1995) 75 310 IPR018962 -
Bma13g01027 341 PANTHER OS05G0500400 PROTEIN 1 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01027 - - - vvi:100253680 405.216
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g421 . . . . Bpe09g00194 . . Bma13g01027 . . . . . . . . . . . . . . . . Cla10g00539 . . Cco10g0543 Clacu10g0559 . . . . . Cone15ag1138 . Csa03g00544 . Cme06g02308 . . . Bda12g00888 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00632 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009965 1 6 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01027 Bma_Chr13 FPKM 8.041426 7.576875 23.524405 24.119383 10.389453 9.036918 8.066175 151.383698 154.586563 145.650375