Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01053 ATGATGCAGCAGCCGGGTGCGGGTATGGTTCCATCGTCGCAGATGCCTCCTATGTCGTCCGATCAGTTTACTCAGCAGTACCAACAGCACCAGCAGTGGATGATGAACCAGCCGCATCAGCAGGCTCTATCCCAGCTGATTCCACCTCCATCTGGATGGGCCCCGCAGGGGGTGCCTCCGCCTATGCAGGCGCAGGGACATCAATACTCTGGCGATGCTAATGCTGGATCTAATGAGGTTCGATCTCTCTGGATAGGAGACTTGCAACAGTGGATGGATGAAAACTATATTATTAACTGCTTCTCTCAGACTGGAGAGTTTGTTTCCGCCAAGGTGATTCGAAATAAAATAACCGGCATACCTGAGGGATATGGTTTTGTTGAGTTTGTCAGTAATGCTGCTGCTGAGAAAATTTTACAAAGTTATAATGGTACATTAATGCCAAATAGTGAACAGAATTTTCGATTGAACTGGGCAACCTTTGGTGCCGGTGAGAGGCGTCAAGAGGATGGTCCTGAATTTACAGTTTTCGTGGGAGATTTAGCTGCTGATGTTAATGACTATACACTGCAAGAAACGTTTAAAACAGTGTACCATTCTGTTAAAGGAGCAAAAGTTGTCACTGATCGAACCACAGGACGTTCTAAAGGTTATGGGTTTGTCAAGTTTGGCGATGAAAACGAACAAATGCGTGCCATGACGGAAATGAATGGTATTTATTGTTCCTCAAGACCCATGCGTGTTGGACCTGCTGCTACAAAGAAATCTGTTGGTGGATCACCATACCAGAATGCTAGTTACCAGAACACACCCGGAAATCCTGGGGAAAATGACCCAAATAATACAACAATATTTGTTGGGGGCTTGGACTCCAGTGTTACAGATGATGTGTTGAAACAAGTTTTTGGCCAATTTGGAGAGCTTGTTCATGTGAAAATACCCATGGGAAAGCGGTGTGGTTTTGTTCAGTTTGCCAACAGAATGAGTGCGGAACAAGCATTATCAATGTTGAATGGAACCCAACTGGGTGGACAGAGTATTCGTCTTTCATGGGGCCGTAGTCCTTCAAATAAGCAACAGCCAGATCAGGCCCAGTGGAATGGTGGTGGATATTATGGGTATGGACAAGGATATGACACATACGGATATACCCAAAATCCACAAGAGCATAATATGTATTATGGAGGATACCCTGGGTATGGTAACTACCAGCAGCCGGGTTCTTACCAACGACCACATCAGTGA 1245 45.46 MMQQPGAGMVPSSQMPPMSSDQFTQQYQQHQQWMMNQPHQQALSQLIPPPSGWAPQGVPPPMQAQGHQYSGDANAGSNEVRSLWIGDLQQWMDENYIINCFSQTGEFVSAKVIRNKITGIPEGYGFVEFVSNAAAEKILQSYNGTLMPNSEQNFRLNWATFGAGERRQEDGPEFTVFVGDLAADVNDYTLQETFKTVYHSVKGAKVVTDRTTGRSKGYGFVKFGDENEQMRAMTEMNGIYCSSRPMRVGPAATKKSVGGSPYQNASYQNTPGNPGENDPNNTTIFVGGLDSSVTDDVLKQVFGQFGELVHVKIPMGKRCGFVQFANRMSAEQALSMLNGTQLGGQSIRLSWGRSPSNKQQPDQAQWNGGGYYGYGQGYDTYGYTQNPQEHNMYYGGYPGYGNYQQPGSYQRPHQ 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43224008 43228366 + Bma010173.1 Bma13g01053 93782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01053 414 Gene3D - 80 160 IPR012677 -
Bma13g01053 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723
Bma13g01053 414 MobiDBLite consensus disorder prediction 49 73 - -
Bma13g01053 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 348 IPR000504 GO:0003723
Bma13g01053 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 246 IPR000504 GO:0003723
Bma13g01053 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 151 IPR000504 GO:0003723
Bma13g01053 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 354 IPR000504 GO:0003723
Bma13g01053 414 MobiDBLite consensus disorder prediction 1 30 - -
Bma13g01053 414 CDD RRM3_NGR1_NAM8_like 281 352 - -
Bma13g01053 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 405 - -
Bma13g01053 414 SUPERFAMILY RNA-binding domain, RBD 61 161 IPR035979 GO:0003676
Bma13g01053 414 SMART rrm1_1 175 249 IPR000504 GO:0003723
Bma13g01053 414 SMART rrm1_1 283 350 IPR000504 GO:0003723
Bma13g01053 414 SMART rrm1_1 82 157 IPR000504 GO:0003723
Bma13g01053 414 CDD RRM2_SECp43_like 173 252 - -
Bma13g01053 414 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 24 405 - -
Bma13g01053 414 Gene3D - 262 389 IPR012677 -
Bma13g01053 414 CDD RRM1_SECp43_like 82 162 - -
Bma13g01053 414 Gene3D - 162 261 IPR012677 -
Bma13g01053 414 SUPERFAMILY RNA-binding domain, RBD 164 275 IPR035979 GO:0003676
Bma13g01053 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Bma13g01053 414 SUPERFAMILY RNA-binding domain, RBD 270 382 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01053 - - - jre:108984045 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00260 Bma-Chr5:7245504 Bma13g01053 Bma-Chr13:43224008 0 dispersed
Bma01g02453 Bma-Chr1:82131758 Bma13g01053 Bma-Chr13:43224008 6.24E-160 transposed
Bma03g01324 Bma-Chr3:26514599 Bma13g01053 Bma-Chr13:43224008 5.49E-09 transposed
Bma05g00377 Bma-Chr5:11980763 Bma13g01053 Bma-Chr13:43224008 1.20E-12 transposed
Bma11g00961 Bma-Chr11:42737671 Bma13g01053 Bma-Chr13:43224008 3.96E-12 transposed
Bma13g01081 Bma-Chr13:43645877 Bma13g01053 Bma-Chr13:43224008 0 transposed
Bma13g01053 Bma-Chr13:43224008 Bma14g00340 Bma-Chr14:4227473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g502 . . Bda07g00359 . . . . Bma13g01053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01053 Bma_Chr13 FPKM 10.808545 11.179792 19.895569 19.515244 8.018136 8.535706 8.265049 23.94665 24.936813 22.154839