Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01054 ATGAGACTCCTAATTTTGACTGTTTGCAGCTTCAGTGAACAGGTTTTAGTTCTTGATGAAGCAGATCGAATTCTCGATGTTGGATTTAAGAAGGCATTGAATGCAATTATTTCGCAGCTACCTAAACATAGGCAGACTATGCTATTCTCAGCAACTCAAACAAAGTCAATTCAGGATCTTGCCAGACTCAGTTTGAAGGACCCAGAATATTTAAGTGTTCACAAGGATGCTTTAACTGCCACCCCAAATCTCTTGCAGCAAACTGCAATGATTGTGCCTTTGGAGCAAAAATTGGACATGTTATGGAGTTTCATAAAGTCTCATCTTAATTCTAAGATTCTAGTTTTCCTCTCAAGCTGCAAGCAGGTAAAATTCGTATTCGAAGCATTCAAGAAGCTGCGTCCTGGAATCCTGCTGAAATGTCTGCATGGAAAGATGAGGCAGGAGAGAAGAATAGGAATATACTCTGAGTTCTGTGAGCAACGTGCAGTTCTCTTCTCCACCGATGTGGTATCAAGAGGTCTTGATTTTGATAAAGCAGTTGACTGGGTTGTACAGGTGGATTGTCCTGACAATGTAGATTCTTACATTCACAGAGTTGGGCGAACTGCACGCTATCAATCTAAAGGGAGATCAGTGTTGTTTCTTATTCCTTCGGAGATGAAAATGCTAGAAAAACTACAAGAAGAGAAAGTTCCCGTGAATTTCGTCAAGGCAAACTTAAATAGACTTCAGCCGGTTTCTGGATTACTTTCAGCTTTATTAGTTAAGTATCCAGAAATGCAGCAACTGGCTCAGAGAGCCTTCATCACTTACATGCGATCGATAAACATGCAGAGTGACAAAGAAATTTTTGACATCACGAAAATGCCCATAGATGAGTTTTCAGCATCATTGGGACTCCCTATGACCCCAAAAGTTCGTTTTTTGAACCAGAAAATTAAGCGTATTAAAGCAAGTGGGAAGCCCGATATGGAAAATTCTAACAAGGATATGGATGCAAATATTCCAAGGGAGAAGCTAGACATTGGTGACTTAGATGAAGAAATAGTGAACAAATCGCCTCTTTCAAGGGACAACATCCCTAAGGACATGGTAGACAAAGCTGGTCATGTTGAAGATGTTGTGCCAGCTACACGTGTCTCAAAGAAAAAGAAGTTAAAGATCAACATCCACAGACCAGTGGGTTCCAGAGTTGTCTTTGATGATGACGGTAATACACTTCCCCCGCTCGCCAGGATAGCTGACATAAAATGCGGGGGCGATGTTTCACTTGACAAAGACAAAAAAAGTGAGTATTACAAGAAGATGAGAGCCGAGATGAAGCAGGCCGATAAGGAAGACAAGCTTATAGAAAGGGATCGACTGCGGGAAAAGCGGATCAAGAAAAAGATGAAGGAGAAGAAAGAAGAGGATTTACATTCAGAGTCCGACGAAGATGAAGACACGAGAGGAGACAGACCTCACAAGAGACAGAAGAAATATTTCGACAGCGAGAGTGAAGGGGACGAGAAGAAAGAAAACAAAAACTCCCCGGATTTGGCAGCTGATGCCATTTCTTTGGCAGCTCAGGAAGAGCTGGCTCTGAAATTGTTGAGTTCCATGCACAAGTAA 1614 41.76 MRLLILTVCSFSEQVLVLDEADRILDVGFKKALNAIISQLPKHRQTMLFSATQTKSIQDLARLSLKDPEYLSVHKDALTATPNLLQQTAMIVPLEQKLDMLWSFIKSHLNSKILVFLSSCKQVKFVFEAFKKLRPGILLKCLHGKMRQERRIGIYSEFCEQRAVLFSTDVVSRGLDFDKAVDWVVQVDCPDNVDSYIHRVGRTARYQSKGRSVLFLIPSEMKMLEKLQEEKVPVNFVKANLNRLQPVSGLLSALLVKYPEMQQLAQRAFITYMRSINMQSDKEIFDITKMPIDEFSASLGLPMTPKVRFLNQKIKRIKASGKPDMENSNKDMDANIPREKLDIGDLDEEIVNKSPLSRDNIPKDMVDKAGHVEDVVPATRVSKKKKLKINIHRPVGSRVVFDDDGNTLPPLARIADIKCGGDVSLDKDKKSEYYKKMRAEMKQADKEDKLIERDRLREKRIKKKMKEKKEEDLHSESDEDEDTRGDRPHKRQKKYFDSESEGDEKKENKNSPDLAADAISLAAQEELALKLLSSMHK 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43229623 43233218 - Bma010174.1 Bma13g01054 93783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01054 537 Pfam Domain of unknown function (DUF4217) 251 307 IPR025313 -
Bma13g01054 537 MobiDBLite consensus disorder prediction 480 512 - -
Bma13g01054 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 17 25 IPR000629 -
Bma13g01054 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 227 IPR027417 -
Bma13g01054 537 Pfam DEAD/DEAH box helicase 14 59 IPR011545 GO:0003676|GO:0005524
Bma13g01054 537 SMART helicmild6 124 207 IPR001650 -
Bma13g01054 537 CDD SF2_C_DEAD 85 216 - -
Bma13g01054 537 Gene3D - 81 335 IPR027417 -
Bma13g01054 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 71 IPR014001 -
Bma13g01054 537 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 14 337 - -
Bma13g01054 537 MobiDBLite consensus disorder prediction 455 473 - -
Bma13g01054 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 93 255 IPR001650 -
Bma13g01054 537 SMART DUF4217_3 246 309 IPR025313 -
Bma13g01054 537 MobiDBLite consensus disorder prediction 455 517 - -
Bma13g01054 537 Pfam Helicase conserved C-terminal domain 97 206 IPR001650 -
Bma13g01054 537 Coils Coil 427 471 - -
Bma13g01054 537 Gene3D - 8 80 IPR027417 -
Bma13g01054 537 PANTHER RNA HELICASE 14 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01054 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - pop:18095824 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g01054 Bma-Chr13:43229623 Bma06g01011 Bma-Chr6:46653136 2.71E-31 dispersed
Bma13g01054 Bma-Chr13:43229623 Bma06g00006 Bma-Chr6:207829 3.49E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01054 Bma_Chr13 FPKM 11.518925 13.147597 31.056667 31.292475 12.374392 11.104497 13.918764 7.309824 7.046612 6.713432