Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01060 ATGAGTTTTTCCAATCCAATCTCGTTTCTCTATGCAAAACCATCCATTTTGGACTCATCAAAAATCTATTTGCTATCATGCCGAAAACCCCGTTCGATTTTCTCTCGGTCGAATTCGGTTGTTGAGGTTCAGTGCGGCCTACGTGAGTTACGGGAGCGAATTGATTCTGTAAAGAGTACGCAGAAAATCACTGAAGCGATGAGGCTCGTTGCTGCATCTAAAGTTCGACGGGCACAGGAAGCAGTCATCAATGGCCGACCGTTCTCGGAAACCCTACTGGAGGTTCTGTATGAAATCAACGAGCAGCTTCAAGCAGATTCAATAGATGTTCCTTTAACAAACGTTCGCCCTGTAAAAAGAGTTGCTCTCGTGGTAATCACTGGAAATCGAGGCCTTTGCGGCGGCTTCAACAATTTGGTGATAAAAAAAGCCAAAAATCGAATCGATGAATTGAGGATCCTCGGAGTGGATCACACACTAATCAGCGTCGGAACCATGGGGAATTCTTATTTCATGCGCAGGCAAAATGTCGAAGTAGACAGTTTCGTTGAAAGAGGTCCATTTCCAACTGTGAAAGAAGCTCAAACTATTGCAGACAAAGTGTTTTCTCGTTTTCTCAGTGAAGAAGTGGATAAGGTTGAGCTTTTATACACAAAATTCGTCTCTCTAATTTCTTCAAGCCCTGTGATCCACACACTGCTTCCTCTTTCTCCAAAGGGTAAAATCCTTGATGCGAATGGAAATTCCATTGATGCAGAGGAAGATGAGCTCTTCAGATTAACGACAAAGGAAGGGAAATTGAGTCTAGAAAGAGAAAAAATTGAGAGAGAGAAGAAAAAATTCACGCCATTTTTACAATTCGAGCAGGACCCAGTTCAGATCGTCGATGCTATGATGCCTCTGTATTTGAATAGTCAGATTTTGAGGGCATTGCAGGAATCCACAGCCAGTGAATTGGCTGCTAGAATGACGGCCATGACGAATGCTTCCGATAATGCAGTTGAATTAACGAGGTCTCTTTCGATTGCATACAACAGGGAAAGACAAGCCAAAATTACAGGAGATATTTTGGAGATTGTAGCTGGCGCTGAGGCACTTAAAGGTTTGAATTGA 1113 42.86 MSFSNPISFLYAKPSILDSSKIYLLSCRKPRSIFSRSNSVVEVQCGLRELRERIDSVKSTQKITEAMRLVAASKVRRAQEAVINGRPFSETLLEVLYEINEQLQADSIDVPLTNVRPVKRVALVVITGNRGLCGGFNNLVIKKAKNRIDELRILGVDHTLISVGTMGNSYFMRRQNVEVDSFVERGPFPTVKEAQTIADKVFSRFLSEEVDKVELLYTKFVSLISSSPVIHTLLPLSPKGKILDANGNSIDAEEDELFRLTTKEGKLSLEREKIEREKKKFTPFLQFEQDPVQIVDAMMPLYLNSQILRALQESTASELAARMTAMTNASDNAVELTRSLSIAYNRERQAKITGDILEIVAGAEALKGLN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43321472 43322584 + Bma010180.1 Bma13g01060 93789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01060 370 Gene3D - 113 237 - -
Bma13g01060 370 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 46 366 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 Pfam ATP synthase 47 366 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 PRINTS ATP synthase gamma subunit signature 344 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 PRINTS ATP synthase gamma subunit signature 118 137 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 PRINTS ATP synthase gamma subunit signature 211 228 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 PRINTS ATP synthase gamma subunit signature 313 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 48 366 IPR035968 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 CDD F1-ATPase_gamma 47 363 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 Hamap ATP synthase gamma chain [atpG]. 44 366 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 366 - -
Bma13g01060 370 PANTHER ATP SYNTHASE GAMMA CHAIN 1 366 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bma13g01060 370 Gene3D ATP synthase, gamma subunit, helix hairpin domain 45 112 - -
Bma13g01060 370 Gene3D ATP synthase, gamma subunit, helix hairpin domain 262 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00967 Bma-Chr12:41663442 Bma13g01060 Bma-Chr13:43321472 4.90E-21 dispersed
Bma13g01060 Bma-Chr13:43321472 Bma08g00240 Bma-Chr8:2961972 3.04E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01060 K02115 - nnu:104610940 501.516