Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01063 GTTAGAACTGAATCCAGTTGTGCAATTAGCTCCAAGGCATGTAGGGAGAAGTTGCGCAGGGACAGGTTGAACGACAAGTTTCTGGAATTGGGAGCTATATTAGAGCCTGGAAGGCCACCCAAAACAGATAAGACTGTTATATTGAACGATGTCATCCGAATGGTAACTCAAATGAGGACCGAAACCCAGAAGCTGAAAGACTCAAATTCAAGTCTGCAGGAAAAGATAAAAAAGCTGAAGGTCGAGAAAAAAGAGCTTCGTGATGAGAAACAGAGGTTAAAAGGAGAGAAGGAGAAGCTGGAGCAACAAATGAAATCCTTGAATACAACCCCAAGTTTGTTGTCTTCCCCTCCTGCAATTCCAGCTGCATTTGCTGCTCCTGGCCAAGTTCCAGGAAATAAGTTGGCGCCATTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATACCACCAACTTCAGTCGACACATTGCAGGATCACGTCCTACGACCTCCGGTCGCTTAA 507 45.96 VRTESSCAISSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKTVILNDVIRMVTQMRTETQKLKDSNSSLQEKIKKLKVEKKELRDEKQRLKGEKEKLEQQMKSLNTTPSLLSSPPAIPAAFAAPGQVPGNKLAPFISYPGVAMWQFIPPTSVDTLQDHVLRPPVA 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43338811 43339490 + Bma010183.1 Bma13g01063 93792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01063 168 SMART finulus 13 64 IPR011598 GO:0046983
Bma13g01063 168 PANTHER BHLH TRANSCRIPTION FACTOR 1 168 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bma13g01063 168 PANTHER TRANSCRIPTION FACTOR ILR3 1 168 - -
Bma13g01063 168 CDD bHLH_AtILR3_like 12 73 - -
Bma13g01063 168 Gene3D - 10 84 IPR036638 GO:0046983
Bma13g01063 168 Coils Coil 55 110 - -
Bma13g01063 168 Pfam Helix-loop-helix DNA-binding domain 11 58 IPR011598 GO:0046983
Bma13g01063 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 58 IPR011598 GO:0046983
Bma13g01063 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01316 Bma-Chr7:48705388 Bma13g01063 Bma-Chr13:43338811 2.04E-53 dispersed
Bma13g01063 Bma-Chr13:43338811 Bma14g00357 Bma-Chr14:4355988 3.79E-80 dispersed
Bma13g01063 Bma-Chr13:43338811 Bma13g01026 Bma-Chr13:42866561 9.00E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58261 PF00010 HLH 1.20E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01063 - - cit:102611674 243.817