Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01065 ATGGATTTTGCTACGGTGAGGAAGAAATTGGCTAGTGGAGCCTATTCAACTTTGGAACATTTTGCGACTGACATATTCCTTATTTGCTCAAATGCAATGCAATATAATGCACCAGAGACCATATACTATAAACAGGCCCATACCATACAAGAGCTTGCAAAGAAGAAATTTGAAAGGTTAAGAGTTGATTATGAAGGCTCTGAGAAAGAGCTAAAGCTAGAGCAGAAAACAAAATCCGATCATTTAGTCAAGAAACTGGTAAAGAAGCTGCCAGGCCGGATCCCACAGGAACCAATTGGATCAGATTTCACCTCAGGTGCTACTCTTGCCACTGCTGGAGATGTTCAGAACTGTTCCTATCCAACCCAAGGTGGTAATGATGAGAAAAATGGCAATATTGATGGGCATGTAGAAGGAAGTTCTTCTCTATATGATAATAATTTGGAGAAAGCAGAAGAATCACTTTTAGGTAAGGGGTTCTTATCTAGATTAGGGAGAAAGCCGGTGCTGCTTGATGAAAACCGTCGAGCAACATATAATATTTCTAATCAGATAGAAGTCAGATCAGAATCAATATTATCAACCTTTGAAGGAGAAATGAAGCAGTTTGTTGCAGTTGGCCTACATGCAGAATATTCATATGCAAGGAGCTTGGCTCGTTTCGCTGCAACTCTTGGGCCTGTTGCTTGGAAAGTTGCCTCCAAAAGGATTGAGCAAGCCCTTCCTGATGGGTGTAAATTTGGCTTAGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCAGTACTAATATTTGAGAATCACAATCTGAAGGAATTTGGTTTATTTCCTCCCTCGCCTTCTGTTGCAGAAGAATTGAGAAAGAATGAGAAATTGTTAACTATCTCTTTTCCTTCCAAGGAGAACAGCATGAATGGGCCTAATACAGAGGTGAAACAATCTTTGTTGGATCCTGATAGGAGGGATACTTCAAATGTCAAACAAGTATTGTTTGCTCCGGGAGGGATCAAACATAATTTACCCTTAAATGCTGCATATCAGCAGCAAAACCTACATTCCAACAATTTTACGAAACCGAGCAAGATGAATAATCAGTTTGAGTTGAACTTGTTACCCACCCCTATTCAGAATAATGCTGATCCTGTCTCAGAAAAGCAATGTTCGAATAATTCACAATCTATTGCTCCCAGGTCCACAGACTCTGCCCCTGTTAAAATGAGTCTTCTATCATGTGGATCTTTTAAACTGCCAGATTCTAATGGTGCTGTCACTGCAGTATTACCAAATGGAAAAAGAGTGAGTGATTGCTTAAATACTCATCCTGCTATAGTTTCTTCTGATATTCTAGCTAGAGTGGCAGCATGCTCCTCCCATGGCCAAGAGCAGGGTCTTGCTGACCCAGTTCAGTTAATGAGATCGTTGAGTGAAAAGTTTCAAAGGAATCAGATATATTCAAATCAAGGTCCAGTAGAAGCTCCTCCAGTTATGACAGTTGAGTGCAATACCAGAAAGAATAATGAATCCAACAATGCTTCCATGGCAGCTGCCCGTGCTTGGATGTCTGTTGGGGCTGGAGGTTTTAAGAAAATTACAGAAAATACTCTTCTGCCAAATAATCACATATCTGCAGACTCACTATACAACCCAGCCAGGGACTTTAATCCACAAATCACTCGAGCTCGTGTGGAGCCTCCTAGTGCTGTGGGGAACAAATTTCATTCTGAGAAAAATGGAATCCCCTTGCAGACAAGTTTACCTCAGACTGTCCGTATGGGCAATGAACCACAGCGAAATCAACCTATAGTTTTTCCACAATTATCTCCTGCCGACTTGTCTAGGTTTCAAGTGCATCCCCATTGGCAAGGTCTTAGCCCCCGTGGCCGGCCAAAGCAAAAGCAAGAAATGTTTCCCCCAGACTTGAACATTGGCTTCCAGAGCTCCAGCTCTCCTGTTAGACAATCCTCTGGTGTCCAAATGGACTCACAGCAGCCAGACCTGGCTTTGCAACTTTGA 2013 42.13 MDFATVRKKLASGAYSTLEHFATDIFLICSNAMQYNAPETIYYKQAHTIQELAKKKFERLRVDYEGSEKELKLEQKTKSDHLVKKLVKKLPGRIPQEPIGSDFTSGATLATAGDVQNCSYPTQGGNDEKNGNIDGHVEGSSSLYDNNLEKAEESLLGKGFLSRLGRKPVLLDENRRATYNISNQIEVRSESILSTFEGEMKQFVAVGLHAEYSYARSLARFAATLGPVAWKVASKRIEQALPDGCKFGLGWVGEYEPLPTPVLIFENHNLKEFGLFPPSPSVAEELRKNEKLLTISFPSKENSMNGPNTEVKQSLLDPDRRDTSNVKQVLFAPGGIKHNLPLNAAYQQQNLHSNNFTKPSKMNNQFELNLLPTPIQNNADPVSEKQCSNNSQSIAPRSTDSAPVKMSLLSCGSFKLPDSNGAVTAVLPNGKRVSDCLNTHPAIVSSDILARVAACSSHGQEQGLADPVQLMRSLSEKFQRNQIYSNQGPVEAPPVMTVECNTRKNNESNNASMAAARAWMSVGAGGFKKITENTLLPNNHISADSLYNPARDFNPQITRARVEPPSAVGNKFHSEKNGIPLQTSLPQTVRMGNEPQRNQPIVFPQLSPADLSRFQVHPHWQGLSPRGRPKQKQEMFPPDLNIGFQSSSSPVRQSSGVQMDSQQPDLALQL 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43360999 43364193 - Bma010185.1 Bma13g01065 93794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01065 670 MobiDBLite consensus disorder prediction 640 670 - -
Bma13g01065 670 CDD Bromodomain 1 57 - -
Bma13g01065 670 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 670 - -
Bma13g01065 670 PRINTS Bromodomain signature 6 24 IPR001487 GO:0005515
Bma13g01065 670 PRINTS Bromodomain signature 24 43 IPR001487 GO:0005515
Bma13g01065 670 Gene3D - 1 89 IPR036427 GO:0005515
Bma13g01065 670 Pfam Bromodomain 1 47 IPR001487 GO:0005515
Bma13g01065 670 ProSiteProfiles Bromodomain profile. 1 43 IPR001487 GO:0005515
Bma13g01065 670 SUPERFAMILY Bromodomain 1 60 IPR036427 GO:0005515
Bma13g01065 670 MobiDBLite consensus disorder prediction 619 670 - -
Bma13g01065 670 MobiDBLite consensus disorder prediction 380 400 - -
Bma13g01065 670 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01065 K22184 BRD9; bromodomain-containing protein 9 - qsu:112014188 729.169
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00553 Bma13g01065 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00553 Bma-Chr10:6691174 Bma13g01065 Bma-Chr13:43360999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g528 . . . . . . Bma10g00553 Bma13g01065 . . . Cma09g00958 Car01g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01065 Bma_Chr13 FPKM 6.401881 6.263861 0.0 0.109726 0.563416 0.622565 0.433353 3.243569 3.017791 2.708791