Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01068 ATGGTCCTTGAATATATTTTTCATGAAGGTGATTTGGTGGATGCTGTTGTTCCTTTTATGGGTGAATCTATAACAGATGGAACCCTAGCAAAATTTCTGAAAAATCCTGGAGATAGGGTGGAAGTTGATGAACCAATTGCTCAAATTGAAACAGACAAGGTCACTATTGATGTTGCAAGTCCTGAAGCCGGTGTTATTGAAAAGCTTGTAGCCAAGGAAGGGGATACTGTAGAACCCGGTGTCAAGATTGCTGTCATTTCAAAATCTGGTGGTGTGACAACTCATGTTCTTTCATCTGAGAAGCCGTCTGATAATGCTGCTCCTCAGCCATCTTCTCATCCTCCAAAGATAGAGGAGACTGAAAAACCAAAAGCTGAGTCTGTTCGCAGTACTGAGAAACCCAAACCTGCCCCTCCACCACCCAAACGCTCCGCTACAGAACCCCAACTTCCTCCTAAGGAAAAGGAAAGACGAGTTCCCATGACAAGGCTTCGGAAACGAGTTGCTATGAGATTGAAAGATTCTCAGAACACATTTGCACTGTTAACAACATTCAATGAAGTTGACATGACAAATTTGATGAAGCTTCGTTTTGATTATAAGGATGCATTTGTTGAAAAGCACGGTGTCAAGTTGGGGCTCATGTCAGGATTTGTTAAAGCAGCTGTCAGTGGGCTACAGAATCAACCAATTATAAATGCTGTCATTGATGGGGAGGATATTATATACCGAGATTACATAGATATTAGCATTGCTGTTGGTACGCGAAAGGGTCTTGTTGTCCCCGTCATCCGCAATGCTGAAAAGATGAATTTTTCGGAGATAGAGAAGGAGATCAACACTCTTGCAAAGAAGGCAAACGATGGATCAATATCTATCGATGACATGGCGGGAGGTTCATTTACAATATCAAATGGTGGTGTATATGGAAGCCTTTTGAGCACACCAATAATCAATCCCCCACAGTCTGCAATCTTGGGTATGCACTCTATAGTGACACGTCCTATGGTGGTTGGAGGGGAAATTCTCCCTAGGCCAATGATGTACATTGCCCTGACCTATGACCATCGGCTCATCGACGGAAGAGAGGCCGTTTTCTTTCTACGGCGCATTAAAGACGTCGTCGAAGACCCGCGAAGACTTCTCCTCGACGTATAA 1158 43.61 MVLEYIFHEGDLVDAVVPFMGESITDGTLAKFLKNPGDRVEVDEPIAQIETDKVTIDVASPEAGVIEKLVAKEGDTVEPGVKIAVISKSGGVTTHVLSSEKPSDNAAPQPSSHPPKIEETEKPKAESVRSTEKPKPAPPPPKRSATEPQLPPKEKERRVPMTRLRKRVAMRLKDSQNTFALLTTFNEVDMTNLMKLRFDYKDAFVEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGEDIIYRDYIDISIAVGTRKGLVVPVIRNAEKMNFSEIEKEINTLAKKANDGSISIDDMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVTRPMVVGGEILPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43525664 43534167 + Bma010190.1 Bma13g01068 93797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01068 385 MobiDBLite consensus disorder prediction 133 147 - -
Bma13g01068 385 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 107 385 IPR006255 GO:0004149|GO:0006099|GO:0045252
Bma13g01068 385 Gene3D - 12 89 - -
Bma13g01068 385 SUPERFAMILY CoA-dependent acyltransferases 155 384 - -
Bma13g01068 385 MobiDBLite consensus disorder prediction 94 163 - -
Bma13g01068 385 CDD lipoyl_domain 16 86 - -
Bma13g01068 385 MobiDBLite consensus disorder prediction 115 131 - -
Bma13g01068 385 Gene3D - 141 381 IPR023213 -
Bma13g01068 385 MobiDBLite consensus disorder prediction 148 163 - -
Bma13g01068 385 Pfam Biotin-requiring enzyme 17 86 IPR000089 -
Bma13g01068 385 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 5 385 - -
Bma13g01068 385 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 37 66 IPR003016 -
Bma13g01068 385 ProSiteProfiles Biotinyl/lipoyl domain profile. 12 87 IPR000089 -
Bma13g01068 385 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 5 385 - -
Bma13g01068 385 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 154 383 IPR001078 GO:0016746
Bma13g01068 385 SUPERFAMILY Single hybrid motif 13 95 IPR011053 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01068 K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] - rcu:8266247 617.846
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00562 Bma13g01068 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00809 Bma-Chr12:37669163 Bma13g01068 Bma-Chr13:43525664 0 dispersed
Bma13g01068 Bma-Chr13:43525664 Bma14g01732 Bma-Chr14:37214347 1.72E-37 dispersed
Bma13g01084 Bma-Chr13:43808166 Bma13g01068 Bma-Chr13:43525664 0 transposed
Bma10g00562 Bma-Chr10:7039792 Bma13g01068 Bma-Chr13:43525664 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g536 . . . . Bpe09g00166 . Bma10g00562 Bma13g01068 . . Cma01g01120 Cma09g00960 Car01g00994 Car09g00875 Sed07g2678 Cpe06g00776 Cpe02g00780 Bhi09g01660 Tan01g4573 Cmetu01g1279 . . Mch11g1200 . . . . . . . . . . Cone14ag1156 . Lsi02g01894 Csa07g01104 . . Blo07g00897 Blo10g00841 . Bda12g00921 . Bpe03g00785 . . . Cmo01g01170 Cmo09g00960 . . . . . . . . . . . . . Cla09g01019 Cam09g1075 Cec09g1075 Cco09g1094 . . Cre09g1040 . . . Cme01g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003198 2 2 3 4 3 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01068 Bma_Chr13 FPKM 10.706286 12.590099 4.878773 5.035237 8.94276 8.335139 9.323741 3.41083 2.904408 3.298536