Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01069 ATGGAATATAATTTATCAACTGTTTCATCTATGGGAGGGACAACTATGGCTAGTGATGTAGTACCCCCAGATGCTGGTGGCTTTCACGCTGTTTCATTTTCATATGGAAACCCTGATGAATCAAATGACCTTAAAAGTAATGATGCTCATTCTGGTTATAATCCACCTTTCCCGGTGCCAGAAAGTTTATTTCAGAACCTGCCTCCAACAGAAAAAGTACATCAGATTATTGCCAGAACTGCCTTATTTGTTAAAAAACACGGTGGCCAGTCAGAGTTTGTTTTGCGGGTAAAACAAGGAGACAACCCTGCTTTTGGGTTTTTGATGCCTGACCATCATCTTCATGTATACTTTAGGTTTCTTGTTGAACATCATGAACTTCTAACATGTGACGCAAATGAAAAATTGACAAAAGAGAAAGAAGCTAGTAGTGGTGCTTTATCTTTGCTTGGCTCTGTGTATGGGACTGGCGAGGATGAAGATGTTGCTGAGGAAAGTTATAACACCCAAATAAACAAGTCTGAGGATGCTGTTGATGTTAGTAATTCACTTATTTCTCAACAATCAGAACAGACACAATCTTCCACAAATAATTCTGGGAAGCCTGTGGTACAGTCTAAGAAACCAGTTTTTTCTTTGAAGGAAAATGACCTGAACAACAGACAGACTTGTGCAAGTTCTGTTAAAGGTAGAAGTGCAATTAAAAGCAGCACTGCCTCTTTACTTAGTCCTTCAATTGACAAGTCTGAACCTTCTGCTTTGCTTGGCACATCTAAAGTTGAACTACCTATTTTGGAGCCTCCATCTGACATTAAGAAAGTGGTTGATAAGATAGTTGAGTTCATTCTAAGGAATGGAAGACAATTTGAGGCAGTTCTTGCTGAGCAGGATCGAAGTCATGGAAGATTTCCGTTTCTTCTGCCATCTAACCATTATCATCCTTACTATTTAAACATCCTTAAAAAGGCACAAGAGCTTTCCAGCAAGGGTCTTATTTCGGAAAAACACGAGTCTTTTGGACGTGGAATTGACAAGAAAAGTGCTGCTTCATTAAGAGAAAAAGTTGGTTCATCTTTGAAATCAACTGATGATGATATACCATGTGACTATGAAAGAAAGGACAAGTTTAAGATGGTGATTGGAAAATCAAAAAAGGAAGGTCTAGATGTACCTTCAAAACCCAACCTGCCACCAGCCGAATTCACTGTAGATGCAGCAGCTGCAGCTGCTATTCTTCAGGCTGCCACACGGGGAATTAAGAATTCTAGTTTAGAAAATTTTTCTAAGACATCATTAATAGGATGTGGTCATACCTCAAGCATCGGAAGCCTCTACTCATCTCAACCTGGATCTTCTATGCTTAAATTGGATCAGAAAGGAGAATCTGGTGTGCCTGTCTCAGTTGGAAAAGCTATTGCAGAGACGGGCAAGATTGCTGGTGTTAGTGAGGCTGACTCTTCTGAACATGAGAAGAATTTGAAGAAGGCTGAAAGATTGAAACGTGCAAAGATTTTTGCAACAATGATAAAAGGTGGTTCTGTACCACTGAAAACAGAACCAGGAAGGGGGCTTTCAGTCGAACCTCTTGGCTCAGGGACTTCTACACCAGTTGCTGAGGCTACAGGCCTTGTGGGTAAAGAAAGAGAAGGAAGTTCTGATCCGTTCAAGTCTTCAAAGTTCGAAAAGAACAATTCTGACTCAAATAATGAACGGAGATCAAAGAGGAGCTACCGATCTAGAGCTGATAGACCTGGTAGTGATATGGAAGGAAGTGAGAAGGAAGAAGAAGAAGTAAAAAGGGAACATAAACACTCTAGGAAGAAGCACCGTTCTCATCGATCTTCACACAAGCACAGGAAAAGGCACTCCTCCAAGCATAATGGCTCATCAGATTGTGAACTTCAGGATAAGCAAAGGGACTCATCCGATGATAATCATGGACGTTCTAAATCCAGACGTCGGAATAAGAACACCAAGGACGAGAAACAGTCTAAACACGAGAGCTCCACCGAAGAGGAACGATGGAATTCCCGAAGTAAGCACAAGAATTATGGGTCTTCTGGCGATGAAAGTCCGCATCGAAGAAGGGCCTCAAAGAGAAAGACGGTTCACTCTACAGATTTGGAGGAGGGAGAGATAAATTCATCAAAGGCTAGCAAAATCGAGACTGGCAGCTGGGATCCTTCCGAAAGCTTTGCAAAATTCAACAATGGTATACGGGCTCAATCAGAGCCGTCAAATACCGTTGAAGCACCCGAAGATCTTAAAGCCAAAATCCGAGCAATGCTTATAGCAACATTGTGA 2304 41.41 MEYNLSTVSSMGGTTMASDVVPPDAGGFHAVSFSYGNPDESNDLKSNDAHSGYNPPFPVPESLFQNLPPTEKVHQIIARTALFVKKHGGQSEFVLRVKQGDNPAFGFLMPDHHLHVYFRFLVEHHELLTCDANEKLTKEKEASSGALSLLGSVYGTGEDEDVAEESYNTQINKSEDAVDVSNSLISQQSEQTQSSTNNSGKPVVQSKKPVFSLKENDLNNRQTCASSVKGRSAIKSSTASLLSPSIDKSEPSALLGTSKVELPILEPPSDIKKVVDKIVEFILRNGRQFEAVLAEQDRSHGRFPFLLPSNHYHPYYLNILKKAQELSSKGLISEKHESFGRGIDKKSAASLREKVGSSLKSTDDDIPCDYERKDKFKMVIGKSKKEGLDVPSKPNLPPAEFTVDAAAAAAILQAATRGIKNSSLENFSKTSLIGCGHTSSIGSLYSSQPGSSMLKLDQKGESGVPVSVGKAIAETGKIAGVSEADSSEHEKNLKKAERLKRAKIFATMIKGGSVPLKTEPGRGLSVEPLGSGTSTPVAEATGLVGKEREGSSDPFKSSKFEKNNSDSNNERRSKRSYRSRADRPGSDMEGSEKEEEEVKREHKHSRKKHRSHRSSHKHRKRHSSKHNGSSDCELQDKQRDSSDDNHGRSKSRRRNKNTKDEKQSKHESSTEEERWNSRSKHKNYGSSGDESPHRRRASKRKTVHSTDLEEGEINSSKASKIETGSWDPSESFAKFNNGIRAQSEPSNTVEAPEDLKAKIRAMLIATL 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43552640 43555921 - Bma010192.2 Bma13g01069 93798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01069 767 Pfam Surp module 75 123 IPR000061 GO:0003723|GO:0006396
Bma13g01069 767 Pfam Surp module 273 320 IPR000061 GO:0003723|GO:0006396
Bma13g01069 767 Coils Coil 588 608 - -
Bma13g01069 767 MobiDBLite consensus disorder prediction 717 749 - -
Bma13g01069 767 Gene3D Surp module 69 125 IPR035967 GO:0003723|GO:0006396
Bma13g01069 767 MobiDBLite consensus disorder prediction 185 205 - -
Bma13g01069 767 PANTHER SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG 25 766 - -
Bma13g01069 767 MobiDBLite consensus disorder prediction 549 602 - -
Bma13g01069 767 SMART surpneu2 272 325 IPR000061 GO:0003723|GO:0006396
Bma13g01069 767 SMART surpneu2 74 127 IPR000061 GO:0003723|GO:0006396
Bma13g01069 767 MobiDBLite consensus disorder prediction 513 751 - -
Bma13g01069 767 MobiDBLite consensus disorder prediction 603 625 - -
Bma13g01069 767 ProSiteProfiles SURP motif repeat profile. 274 316 IPR000061 GO:0003723|GO:0006396
Bma13g01069 767 Gene3D Surp module 259 329 IPR035967 GO:0003723|GO:0006396
Bma13g01069 767 ProSiteProfiles SURP motif repeat profile. 76 118 IPR000061 GO:0003723|GO:0006396
Bma13g01069 767 MobiDBLite consensus disorder prediction 626 716 - -
Bma13g01069 767 SUPERFAMILY Surp module (SWAP domain) 54 123 IPR035967 GO:0003723|GO:0006396
Bma13g01069 767 SUPERFAMILY Surp module (SWAP domain) 258 320 IPR035967 GO:0003723|GO:0006396
Bma13g01069 767 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 25 766 IPR040397 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01069 - - - qsu:112013017 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g01069 Bma-Chr13:43552640 Bma15g00477 Bma-Chr15:5486044 1.19E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g541 . . . . Bpe09g00164 . . Bma13g01069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016228 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01069 Bma_Chr13 FPKM 2.216296 3.091914 1.681945 2.562353 2.687007 3.129745 3.18367 1.305153 0.943452 2.443819