Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01072 ATGGAATCGGATAGAACAGAAGCTGCTAAAATACTTCAAGAAATCGAAACATTAAAGTCCTCGAAGCTCGATATTGAGCGTCGGATTGCGGCTCTCGAAGCACAGCTCCAGGAGATGAAAGTTCAGCCGGAAAACGATGTTTCGAACAGCTCTTCTACTCCGGTGTCCACGTTCGAATCCAACTTGCCTCAGAGATTGCCACCTGAAATGATTTACAGATACAGTCGACACCTCTTGCTTCCCTCTTTCGGCGTCCAAGCTCAATCGAAGCTGTTGAACTCTTCGATACTAGTAATTGGGGCGGGAGGACTAGGTTCGCCAGCTCTGTTATACCTTGCAGCATGTGGTGTCGGTCGCTTGGGCATTGTTGATCATGATGTGGTTGAGCTCAATAACATGCATCGCCAGATTATCCATACTGAAGCTTATATTGGTCAGTCAAAAGTGAAATCTGCTGCTGCTACTTGCCACTCGATCAACTCCACAGTTCAGATTGTGGAACATATTGAAGCTCTTAGGACATCAAATGCTTTGGAGATTATGAGCAAATATGATATTGTAGTAGATGCCACAGATAATGCTCCAAGCCGGTACATGATTAGTGATTGCTGTGTGGTGTTAGGAAAGCCTCTCGTCTCTGGTGCAGCCTTGGGAATGGAGGGGCAGCTCACAGTATACAATTATAACGATGGCCCGTGTTATCGATGCTTATTTCCCATTCCACCACCAACAACAGCATGTCAAAGATGTGCAGACAGTGGCGTCTTAGGTGTAGTTCCTGGCATCATTGGCTGTCTCCAAGCCCTGGAAGCTATTAAAATAGCAAGTGAAGTTGGTGAACCACTTACAGGAAGGATGCTTCTGCTTGATGCATTATCGGCTAGGATCCGTATTGTCAAGATTCGAGGGAAGTCGTTGCAATGTGAGGTTTGTGGAGAAAATGCTCAATTCAATGCACAAAAATTCAGAGAATTTGATTATGAGAAGTTCACTCAGTCCCCTCTATCTACGACTGCACCAAAGTTAAAGCTGCTTGAACCAGATTCAAGAATAAGCAGCAAAGAGTACAAGGAGAGAATCATTAGTGGCGAGGCCCATGTTTTGGTGGACGTTCGACCAAATCACCACTTCAAGATTGTTTCTCTGCCAAACTCCATAAACATCCCTCTTTCAAGCTTGGAGGCTCGATTATCAGAAATATCGTTGGCTTTGAAGGAAGAGGAAGCTCGGCACTGCAGTACAAATTCTGGTAGTCACGCTCAATTATACGCGATTTGTAGGCGAGGCAATGATTCTCAGAGGGCCGTTGAGTACCTCCACAAGAAGGGGTTTGATTCAGCCAAGGATATCATTGGTGGTTTGGAAGGCTGGTCTCGAGAGGTAGATCCAAGCTTCCCTACGTATTAG 1407 45.49 MESDRTEAAKILQEIETLKSSKLDIERRIAALEAQLQEMKVQPENDVSNSSSTPVSTFESNLPQRLPPEMIYRYSRHLLLPSFGVQAQSKLLNSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQIIHTEAYIGQSKVKSAAATCHSINSTVQIVEHIEALRTSNALEIMSKYDIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGMEGQLTVYNYNDGPCYRCLFPIPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASEVGEPLTGRMLLLDALSARIRIVKIRGKSLQCEVCGENAQFNAQKFREFDYEKFTQSPLSTTAPKLKLLEPDSRISSKEYKERIISGEAHVLVDVRPNHHFKIVSLPNSINIPLSSLEARLSEISLALKEEEARHCSTNSGSHAQLYAICRRGNDSQRAVEYLHKKGFDSAKDIIGGLEGWSREVDPSFPTY 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43577421 43580968 - Bma030622 Bma13g01072 93801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01072 468 MobiDBLite consensus disorder prediction 41 60 - -
Bma13g01072 468 Coils Coil 390 410 - -
Bma13g01072 468 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 6 453 IPR045886 -
Bma13g01072 468 SMART rhod_4 352 463 IPR001763 -
Bma13g01072 468 Coils Coil 15 42 - -
Bma13g01072 468 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 71 435 IPR035985 GO:0008641
Bma13g01072 468 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 468 IPR028885 GO:0002143|GO:0004792|GO:0005829
Bma13g01072 468 Pfam ThiF family 74 309 IPR000594 -
Bma13g01072 468 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 6 453 - -
Bma13g01072 468 Gene3D - 69 318 - -
Bma13g01072 468 Gene3D - 349 468 IPR036873 -
Bma13g01072 468 CDD ThiF_MoeB_HesA_family 73 301 - -
Bma13g01072 468 Pfam Rhodanese-like domain 354 459 IPR001763 -
Bma13g01072 468 MobiDBLite consensus disorder prediction 40 60 - -
Bma13g01072 468 ProSiteProfiles Rhodanese domain profile. 362 466 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01072 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - zju:107432745 718.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00258 Bma-Chr6:3565203 Bma13g01072 Bma-Chr13:43577421 3.74E-14 dispersed
Bma06g01214 Bma-Chr6:49254942 Bma13g01072 Bma-Chr13:43577421 5.77E-12 dispersed
Bma11g00067 Bma-Chr11:785262 Bma13g01072 Bma-Chr13:43577421 5.89E-15 dispersed
Bma13g01072 Bma-Chr13:43577421 Bma07g00055 Bma-Chr7:1428050 1.46E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00501 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.2 2.0e-146 515.4
Bma03g00501 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.2 2.4e-113 405.2
Bma06g01161 . 1 430 Sulfurtransferasese/Rhodanese AT4G01050 52.4 4.6e-121 431.8
Bma04g00466 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 73.5 3.9e-83 304.7
Bma12g01059 . 1 236 Sulfurtransferasese/Rhodanese AT4G24750 71.2 3.0e-101 365.2
Bma07g00284 . 2 184 Sulfurtransferasese/Rhodanese AT5G19370 64.9 9.7e-63 237.3
Bma13g01072 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 72.2 2.3e-151 531.9
Bma12g01221 . 37 249 Sulfurtransferasese/Rhodanese AT4G27700 68.5 5.7e-76 280.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01072 Bma_Chr13 FPKM 44.98798 53.049046 35.754826 32.979458 8.667699 9.88246 8.331555 74.533401 78.157242 77.49762