Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01075 ATCATGAGAGGAAAAGGAGTGGCTGGTGCTCAATTGGTGGCTCCTGCACTTGCTGCCACGGCGGAATCGCCCGTGCCTGTCGATAACTCGGTGGCCGGCGGATCGGTCGCGGGGGGTGTCATGTCCAGAGAGCCGAGGTACAGAGGTGTGAGGAAAAGGCCGTGGGGGAGATTCGCTGCCGAGATCAGAGACCCTTGGAAGAAGTCCAGAGTGTGGCTCGGGACGTTTGATTCTGCTGAGGACGCGGCGCGTGCCTACGACGTCGCCGCTAGGACTCTCCGGGGTCCCAAGGCAAGAACCAATTTCCCTCCCGCGAACCCTAGCTTGCTAGATGTTCCTCCTCCTCGAAACCCGATCGCTCCCAATGAGGTAGCTGCCTTGGATCCTTTCCTTGATAATGAGTTTTTTAATGCTGATGACTTGGAAGAGCCCCCGATTGACCCCCAGAGGCCGACCTCAAGCAGTCTGAGCTCCACCGTTGAGTCTTTCAGTGGGCCTAGACCTCGATCAGCGACAGTGGCGCCTCCTGCTTCGGCTTCAGCTTCAGCCTCGAGGAGGCATCCTCGTTCTCCGCCAGTTTCCCCTGAAGACTGTCACAGTGACTGTGATTCGTCGTCATCAGTGATCGACGACTGTGATGTTGCCTCCTCGTCCATGGTCCGTAGACCTTTGCAAATCGACCTCAATTTCCCTCCATTGGAGGACGTCGACTATTCCGGTGATGATCTCCTCTGCACCGATTTATGCCTTTGA 753 56.97 IMRGKGVAGAQLVAPALAATAESPVPVDNSVAGGSVAGGVMSREPRYRGVRKRPWGRFAAEIRDPWKKSRVWLGTFDSAEDAARAYDVAARTLRGPKARTNFPPANPSLLDVPPPRNPIAPNEVAALDPFLDNEFFNADDLEEPPIDPQRPTSSSLSSTVESFSGPRPRSATVAPPASASASASRRHPRSPPVSPEDCHSDCDSSSSVIDDCDVASSSMVRRPLQIDLNFPPLEDVDYSGDDLLCTDLCL 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43608302 43609054 + Bma010197.1 Bma13g01075 93804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01075 250 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Bma13g01075 250 MobiDBLite consensus disorder prediction 97 117 - -
Bma13g01075 250 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Bma13g01075 250 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Bma13g01075 250 MobiDBLite consensus disorder prediction 138 202 - -
Bma13g01075 250 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Bma13g01075 250 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Bma13g01075 250 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Bma13g01075 250 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Bma13g01075 250 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 228 - -
Bma13g01075 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 32 228 - -
Bma13g01075 250 MobiDBLite consensus disorder prediction 148 166 - -
Bma13g01075 250 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00572 Bma13g01075 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02478 Bma-Chr1:82524738 Bma13g01075 Bma-Chr13:43608302 5.49E-30 dispersed
Bma10g00712 Bma-Chr10:10841758 Bma13g01075 Bma-Chr13:43608302 7.75E-25 dispersed
Bma13g01075 Bma-Chr13:43608302 Bma14g00253 Bma-Chr14:3005869 1.82E-30 dispersed
Bma02g01407 Bma-Chr2:56290047 Bma13g01075 Bma-Chr13:43608302 9.87E-43 transposed
Bma10g00572 Bma-Chr10:7101937 Bma13g01075 Bma-Chr13:43608302 5.13E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58263 PF00847 AP2 2.60E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01075 K09286 - rcu:8269014 216.468