Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01077 ATGCTTCCACAGCGCATTAAAAGCAGCATTCTAGATCAGCCAAAGAAGCTTGCCAACTTAATTGACCTTGCCAATCTTCCTTCAACTCTGAGAGACTTTGTGGGACAGTCCCAAATTTCTCGTTTGGGCTGTTTTATGCGCGTTTGGTCGTACATCAAAACCAACAAGCTTCAGGATCCAAACAACAAGAATGTGGTCATTTGCGATGAGAAGTTGAAGAGCATATTGCTAGGCAAGCCTCGAATTGAGCTAGCCGAACTTCCCGCGCTGATCAAACTTCATTTTCCGAAAGAGCGGAAGTGA 303 44.88 MLPQRIKSSILDQPKKLANLIDLANLPSTLRDFVGQSQISRLGCFMRVWSYIKTNKLQDPNNKNVVICDEKLKSILLGKPRIELAELPALIKLHFPKERK 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43619957 43620321 + Bma010199.1 Bma13g01077 93806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01077 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Bma13g01077 100 Pfam SWIB/MDM2 domain 25 95 IPR003121 -
Bma13g01077 100 Gene3D SWIB/MDM2 domain 10 100 IPR036885 -
Bma13g01077 100 SMART swib_2 20 100 IPR019835 -
Bma13g01077 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 99 - -
Bma13g01077 100 PANTHER OS09G0133000 PROTEIN 2 99 - -
Bma13g01077 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Bma13g01077 100 CDD SWIB-MDM2_like 30 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01077 - - - vvi:100247022 184.111
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00573 Bma13g01077 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00274 Bma-Chr12:3667111 Bma13g01077 Bma-Chr13:43619957 5.45E-10 dispersed
Bma13g01077 Bma-Chr13:43619957 Bma13g01088 Bma-Chr13:43850285 5.43E-69 dispersed
Bma10g00573 Bma-Chr10:7125140 Bma13g01077 Bma-Chr13:43619957 1.56E-49 wgd
Bma13g01077 Bma-Chr13:43619957 Bma14g00318 Bma-Chr14:3954943 5.46E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g567 . . . . Bpe09g00154 . Bma10g00573 Bma13g01077 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1176 Cone15ag1189 . . . . Blo07g00886 . . Bda12g00932 . Bpe03g00775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006068 1 1 1 3 2 1 0 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 0 2 1 0 0 5 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58264 PF02201 SWIB 2.10E-22 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01077 Bma_Chr13 FPKM 88.983238 103.318504 69.044594 71.843132 55.501072 47.629055 55.62265 58.820801 58.021801 58.129417