Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01095 ATGGGCACGGTTCGACTACCTAATCCCAAGGGATTAATCTCTACTTCTTCAATTTCCTTCTGTTTTCATCACAAGAGGTCGTCTTTTTCCTCCACCGTTTTCAGAGAATGTCCCCCTTCGCAAGGTAGACAGAAGGGGTTGTCTAGAAGGCACAGTTTGATGGAGGTGAGCTGTTCTTTTTCTTCTATGGACTCCGCCAAGATTAAGGTGGTGGGAGTCGGCGGTGGTGGGAATAATGCCGTCAATCGAATGATTCGCAGTGGTTTACAGGGTGTTGATTTCTATGCCATAAACACAGATGCCCAAGCGCTGGTCCAGTCTGCTGCTGAGAATCCATTACAAATTGGAGAGCTTTTGACTCGTGGTCTAGATGCAGGTACTGGAGGAAATCCACTTTTAGGGGAACAAGCGGCAGAAGAATCAAAAGAAGATATTGCGGATACTCTCAAGGGCTCAGATCTTGTATTTATAACGGCTGGTATGGGTGGAGGTACAGGATCTGGCGCTGCTCCAGTTGTTGCTCAAATCTCAAAAGAGGCTGGTTATTTGACAGTTGGTGTGGTTACCTACCCGTTCAGCTTTGAGGGAAGAAGAAGATCCGTGCAGGCAGGTGTTTGTGTGTGTTTTGGTTGTTTTCAGGCATTGGAGGCTATTGAGAAGTTGCAGAAAAATGTTGATACTCTCATAGTGATTCCTAATGATCGCCTGCTTGACATCGCCGATGAGCAGACTCCCCTACAGGATGCTTTCCTTCTCGCTGATGATGTTCTACGTCAAGGAGTTCAAGGAATTTCAGACATTATCACGATCCCGGGACTGGTCAATGTGGACTTTGCCGATGTAAAGGCAGTCATGAAAGACTCTGGAACTGCGATGCTCGGAGTAGGAGTTTCCTCAAGCAAGAATCGGGCAGAAGAGGCAGCTGAACAAGCGACCTTGGCTCCCCTGCTTGGATCCTCTATTCAATCAGCTACTGGAGTAGTTTATAATATTACTGGAGGAAAAGACATAACCCTGCAAGAAGTTAACAGGGTTTCTCAGGTCGTGACCAGTTTAGCTGATCCTTCTGCAAACATAATCTTTGGTGCAGTTGTGGATGATCGATATAATGGTGAGCTTCACGTTACAATAATTGCAACGGGTTTCTCGCACTCGTTCCAGAAGAATCTGTTGACAGACCCAAGGGCTGCAAAGCTGGTGGACAAAGTAGAGAGCAAGGATGTAACTCACCCTTACAAGACCTTAAACTCTCCAATTGTTGCAACCAAATCCAGCCCCAGAAGGCTCTTCTTTTGA 1296 46.45 MGTVRLPNPKGLISTSSISFCFHHKRSSFSSTVFRECPPSQGRQKGLSRRHSLMEVSCSFSSMDSAKIKVVGVGGGGNNAVNRMIRSGLQGVDFYAINTDAQALVQSAAENPLQIGELLTRGLDAGTGGNPLLGEQAAEESKEDIADTLKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRRRSVQAGVCVCFGCFQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLLGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGELHVTIIATGFSHSFQKNLLTDPRAAKLVDKVESKDVTHPYKTLNSPIVATKSSPRRLFF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43884904 43887963 + Bma010221.1 Bma13g01095 93824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01095 431 TIGRFAM ftsZ: cell division protein FtsZ 61 391 IPR000158 GO:0003924|GO:0005525
Bma13g01095 431 SMART Tubulin_C_4 274 391 IPR018316 -
Bma13g01095 431 PRINTS Cell division protein FtsZ signature 256 278 IPR003008 GO:0005525
Bma13g01095 431 PRINTS Cell division protein FtsZ signature 279 300 IPR003008 GO:0005525
Bma13g01095 431 PRINTS Cell division protein FtsZ signature 154 174 IPR003008 GO:0005525
Bma13g01095 431 SUPERFAMILY Tubulin nucleotide-binding domain-like 66 275 IPR036525 -
Bma13g01095 431 Gene3D - 288 394 IPR037103 -
Bma13g01095 431 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 2 431 IPR045061 GO:0003924|GO:0005525
Bma13g01095 431 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 162 168 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bma13g01095 431 Gene3D Tubulin/FtsZ, GTPase domain 58 287 IPR036525 -
Bma13g01095 431 PANTHER CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC 2 431 - -
Bma13g01095 431 CDD FtsZ_type1 83 381 IPR000158 GO:0003924|GO:0005525
Bma13g01095 431 SMART Tubulin_4 67 272 IPR003008 GO:0005525
Bma13g01095 431 Pfam FtsZ family, C-terminal domain 289 382 IPR024757 -
Bma13g01095 431 SUPERFAMILY Tubulin C-terminal domain-like 274 390 IPR008280 -
Bma13g01095 431 Pfam Tubulin/FtsZ family, GTPase domain 67 240 IPR003008 GO:0005525
Bma13g01095 431 Hamap Cell division protein FtsZ [ftsZ]. 63 397 IPR000158 GO:0003924|GO:0005525
Bma13g01095 431 ProSitePatterns FtsZ protein signature 2. 153 174 IPR020805 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01095 K03531 ftsZ; cell division protein FtsZ - zju:107434326 620.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00581 Bma13g01095 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00581 Bma-Chr10:7151541 Bma13g01095 Bma-Chr13:43884904 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01095 Bma_Chr13 FPKM 1.783288 1.66949 0.746286 0.878129 17.011744 18.05739 16.717688 0.553302 0.304992 0.209245