Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01103 ATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTACGGAGTTGACATCGGACGCAAGAAGAAAACTACCGACTTCTACCAAGAAAGAAGAGGAAGGAGAAGCTGCCACTGAGGAGGTGAAGAAGAGCAAACATCTGTTGCGAAAGATTGAGAAAAGACAGCAAGATCGTAAGCTTGACCAGCATATTGAAGAGCAATTCGGTAGTGGTCGACTATTGGCTTGCATCTCATCAAGACCTGGACAGTGTGGTCGCTCCGATGGATATATCTTGGAGGGCAAGGAGCTGGAGTTTTATACCAAGAAGATCCAAAGAAAGAAAGGGAAGGGGGCTGTAGCTGCCTAA 345 46.38 MQHHLSSGIFSITELTSDARRKLPTSTKKEEEGEAATEEVKKSKHLLRKIEKRQQDRKLDQHIEEQFGSGRLLACISSRPGQCGRSDGYILEGKELEFYTKKIQRKKGKGAVAA 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 43984538 43985568 - Bma010230.1 Bma13g01103 93832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01103 114 Pfam Ribosomal protein S8e 59 91 IPR022309 -
Bma13g01103 114 PANTHER 40S RIBOSOMAL PROTEIN S8 20 111 IPR001047 GO:0003735|GO:0005840|GO:0006412
Bma13g01103 114 Gene3D - 17 107 - -
Bma13g01103 114 MobiDBLite consensus disorder prediction 16 46 - -
Bma13g01103 114 PANTHER RIBOSOMAL PROTEIN S8E FAMILY PROTEIN 20 111 - -
Bma13g01103 114 MobiDBLite consensus disorder prediction 21 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01103 K02995 RP-S8e, RPS8; small subunit ribosomal protein S8e - rcu:8277586 150.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00584 Bma13g01103 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00986 Bma-Chr4:15897976 Bma13g01103 Bma-Chr13:43984538 3.12E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g601 . . . . Bpe09g00140 . Bma10g00584 Bma13g01103 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0034 Cone9ag0036 Cone14ag1194 Cone15ag1216 . . . . Blo07g00876 Blo10g00858 Bda05g00690 Bda12g00946 . Bpe03g00764 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024979 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01103 Bma_Chr13 FPKM 19.994511 21.761402 32.302246 31.979336 20.954018 21.242367 17.726904 42.183926 43.357719 38.668224