Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01107 ATGGACTCTTCTGATGCCCACTCCGACCAGAATCGAATTTCAGACGGCGATGTGCCCGGCGATCCGAATCCGGTTGAATTTCAGGATAGCTCTAAAACTCGCTCTAGTCTTGTAGGCGGCGCTAGGTATAAGCTGATGTCTCCGGCGAAGCTTCCGATCTCTAGGGCTACTTGCATTACGATCCCACCCGGGCTTAGCCCTGGTTCATTTTTGGAGTCTCCGGCAGAGCCTTCTCCTACTACTGGAACCTTTATAAAGTCTCATATGGTTCATGGCTATTCCAGTTCAGGAACATATCCAATTTCCACATCGGTTTTCTCAAATTCAGGCATCTCCGAAGAAGGGAAAGCCAGCCTCTTTGACTTTAAGCCACCTATGAATGCAAATATGGTTTCTGCAGATCTCAATGGCCATAGAAGTGAACAATCTGTCCAAGTTTATGGTGAGCTTTTCTCTCTCTACCTCGTAATCAGTATAACGATCAGTCTTCTTGAGTTCAATGAGTCTCTCGGCCCTGATCACATGGTCATTGCAGGGTTTAGTGCTCCTGCTGAGTTCACCGGCAATGATGTTAATCAGAGACTCCTCACCAATCCAGAAGTTCAAGCCACAGAGTTTGATCATAAAGGAAGTGGGGCTTCAATGGCTGCCGAGAGGTCATCTGATGATGGATATAATTGGCGAAAATATGGGCAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTACAAATGTACTCATCCTAACTGTGAAGTGAAAAAGTTGTTTGAACGCTCTCATGATGGACAAATAACCGAGATTATCTACAAGGGAACCCATGATCATCCTAAACCTCAGCCAAGTCGTCGATGTACATCTTCTAACATTATGTCCATGCAAGAAGAAAGACTTGATAAGCCCACATCCTTACCTGGACAAGATGACAAACCCACTAACAGGTACAGTCATAATTTTCATTCTGCCGATCCAAATGTTGCTTCAGAGCATTCTCTTGTCGTAGCTACTGATGACAATATCGAAGGCTCTGGTTCTATGCCAAACAAGAACCACGATGAAGCAGATGATGACGATCCTTTCTCCAAGAAAAGCAGGAGAATGGAAGCTGCTGGATTTGAAGTAACTCCAGTTATTAAGCCCATACGGGAACCACGGGTAGTAGTTCAAACTTTGAGTGAGGTCGATATCCTCGATGATGGCTACCGCTGGCGCAAATACGGGCAGAAAGTAGTTAGAGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACAAACGTAGGATGTCCTGTGAGAAAACATGTGGAAAGGGCATCTCACAACCCAAAAGCTGTGATAACCACATATGAAGGTAAACACAATCATGATGTTCCGACAGCAAAATCTAGCAGCCACGACACAGCCGGTCCACCCTCGATGGCATGCCCATCCAAGTTTAGAGCGGAAGAAGTTCATGCCATTAGCCTCGATCTAGAAGTTGGTATTAGCAATCCCACGGAGAATAGATCGAACGACTACGGCCAGACAGGTCAATATGAGCTTTCCCATCGTCAAACTCCAAACGGCAGTTCCAACTTTCGGGTAGTTCAAGCAACCCCTGTCTCTACACATTTCAGTGTTCTAAATGGTGGTATAAGTGAATATGGATCTAGAGAAAATGAGATCACTCCTTTGAACCATTCTTCATACCCTTATCCTCAGAATATTGGAAGAATATTGACTGGTCCGTGA 1731 44.95 MDSSDAHSDQNRISDGDVPGDPNPVEFQDSSKTRSSLVGGARYKLMSPAKLPISRATCITIPPGLSPGSFLESPAEPSPTTGTFIKSHMVHGYSSSGTYPISTSVFSNSGISEEGKASLFDFKPPMNANMVSADLNGHRSEQSVQVYGELFSLYLVISITISLLEFNESLGPDHMVIAGFSAPAEFTGNDVNQRLLTNPEVQATEFDHKGSGASMAAERSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRCTSSNIMSMQEERLDKPTSLPGQDDKPTNRYSHNFHSADPNVASEHSLVVATDDNIEGSGSMPNKNHDEADDDDPFSKKSRRMEAAGFEVTPVIKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHNPKAVITTYEGKHNHDVPTAKSSSHDTAGPPSMACPSKFRAEEVHAISLDLEVGISNPTENRSNDYGQTGQYELSHRQTPNGSSNFRVVQATPVSTHFSVLNGGISEYGSRENEITPLNHSSYPYPQNIGRILTGP 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44028849 44032363 + Bma010233.1 Bma13g01107 93836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01107 576 Gene3D WRKY domain 385 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 SUPERFAMILY WRKY DNA-binding domain 390 458 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 SMART WRKY_cls 398 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 ProSiteProfiles WRKY domain profile. 393 458 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 MobiDBLite consensus disorder prediction 307 326 - -
Bma13g01107 576 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 Pfam WRKY DNA -binding domain 399 455 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 30 554 - -
Bma13g01107 576 SUPERFAMILY WRKY DNA-binding domain 219 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 554 IPR044810 GO:0003700
Bma13g01107 576 MobiDBLite consensus disorder prediction 296 362 - -
Bma13g01107 576 Gene3D WRKY domain 211 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01107 576 MobiDBLite consensus disorder prediction 1 34 - -
Bma13g01107 576 MobiDBLite consensus disorder prediction 496 525 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00588 Bma13g01107 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00064 Bma-Chr11:758234 Bma13g01107 Bma-Chr13:44028849 6.62E-84 dispersed
Bma13g00167 Bma-Chr13:1952044 Bma13g01107 Bma-Chr13:44028849 2.54E-79 dispersed
Bma13g01107 Bma-Chr13:44028849 Bma14g01445 Bma-Chr14:27854253 1.16E-80 dispersed
Bma10g00588 Bma-Chr10:7220605 Bma13g01107 Bma-Chr13:44028849 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58267 PF03106 WRKY 7.00E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01107 - - qsu:112006109 694.886