Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01108 ATGCATGAGCCTGAGTCGCATCTGTGTCCGCCGATCGGAAATTATGATCATAGCTCAAGCTCTGAAACCCATCTAACAGTTCAGGACTGTGAAGCATACTGCACCCTGGATTCATTGTCAGGATCAAGCAATTTTACTGATCAAACTTCTCATATTACTATGAACGAAAACATGATTTCTCAGAAAGACTCTCATTCGCTCGACAACTTTTCTGGCTCACCTGTCAGCAAATCTTGCTTATCGGATGATTCTGATGATCTGAGACATAAAATACTAGAATTAGAAACAGCTATGCTTGGACCTGATTTAAATATGCATGACACCTACAACATCAGAAACCCGTATGAACTACAACAAAACGAGGTAGAATCCAAGGAGTGGAATCAAATGATGGAGACGGTCTCAAAAAGGGAATTGAAAGGTATCCTTTGTGCATGTGCGAAAGCCATAGAAGAAGATAATATGTTTATGGCCGAATGGTTGGTCTCGGAATTACGTCAGATGGTATCAGTTTCGGGCGAACCAATCCAACGCATAGGAGCATACGTTTTAGAAGCACTAATTGCAAGATTGGCCTCTTCGGGCAGTTCAATCTATAAAGCCCTTAGATGTAAAGAGCCTCTCAGTAACGAACTTCTGTCGTACATGCACATACTTTACGAAGCCTGCCCATACTTCAAATTCGGATATATGTCGGCAAATGGCGCAATTGCTGAAGCTATCAAGGATGAAAGAAGAGTCCATATAATTGACTTTCAGATCTCACAAGGTACCCAATGGCTGTCACTAATCCAGGCCCTTTCTGCTCGTCCTGGAGGACCCCCCATGATTAGAATAACAGGCATAGATGACCCAACATCAGCTCACGCCAGGGGAGGTGGGCTTGAAATCGTTGGAAAGCGGTTGTATGCCTTTGCAAAGTCTTGTAAAGTACCCTTAGAGTTTCATGCTGTTGAAATTCCTGCCTCTGAACTTGAACTTGAAGATCTAAGAATTCAATCGGGCGAGGCCATTGCCGTGAATTTCGCCCTCATTCTCCATCATATACCTGATGAGGGCGTCACCATTCACAATCACCGGGATAGGATTGTGAGATTGGCAAAGACCTTATCCCCTAAAGTGGTGACTCTAGTTGAGCAAGAGTGTAACACTAATAAAACCTCTTTCTTTCCGCGCTTCCTCGAGATGCTGAAGTTTTATACGGCAATTTTTGAATCTATTGATGTGTTTTTGCCGAGAGAAAACTGGGAGCGGATCAACGTTGAACAACACTGTCTGGCAAGAGAAATTGTGAATATTATCGCATGCGAGGGCATCGAAAGAGTCGAACGTCACGAACTTCTCGAAAAGTGGAAATCAAGGTTTTTTATGGCTGGATTCAAACCTTACCCTTTAAGTACCTTTGTCAATTCTACCATAAGGGCTCTTCTGCAGAACTACTGTGAGAAGTATACACTTGAAGAAAGAGATGGGACTCTATATCTTGGCTGGATGAATCAAATTCTGATAACTTCTTGTGCTTGGGTGTGA 1530 42.88 MHEPESHLCPPIGNYDHSSSSETHLTVQDCEAYCTLDSLSGSSNFTDQTSHITMNENMISQKDSHSLDNFSGSPVSKSCLSDDSDDLRHKILELETAMLGPDLNMHDTYNIRNPYELQQNEVESKEWNQMMETVSKRELKGILCACAKAIEEDNMFMAEWLVSELRQMVSVSGEPIQRIGAYVLEALIARLASSGSSIYKALRCKEPLSNELLSYMHILYEACPYFKFGYMSANGAIAEAIKDERRVHIIDFQISQGTQWLSLIQALSARPGGPPMIRITGIDDPTSAHARGGGLEIVGKRLYAFAKSCKVPLEFHAVEIPASELELEDLRIQSGEAIAVNFALILHHIPDEGVTIHNHRDRIVRLAKTLSPKVVTLVEQECNTNKTSFFPRFLEMLKFYTAIFESIDVFLPRENWERINVEQHCLAREIVNIIACEGIERVERHELLEKWKSRFFMAGFKPYPLSTFVNSTIRALLQNYCEKYTLEERDGTLYLGWMNQILITSCAWV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44033288 44034817 - Bma010234.1 Bma13g01108 93837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01108 509 ProSiteProfiles GRAS family profile. 130 509 IPR005202 -
Bma13g01108 509 Pfam GRAS domain family 141 508 IPR005202 -
Bma13g01108 509 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 18 508 - -
Bma13g01108 509 MobiDBLite consensus disorder prediction 1 20 - -
Bma13g01108 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 508 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00028 Bma-Chr7:1238169 Bma13g01108 Bma-Chr13:44033288 0 dispersed
Bma11g00034 Bma-Chr11:534874 Bma13g01108 Bma-Chr13:44033288 2.30E-171 dispersed
Bma12g00842 Bma-Chr12:38829958 Bma13g01108 Bma-Chr13:44033288 0 dispersed
Bma13g01108 Bma-Chr13:44033288 Bma14g00364 Bma-Chr14:4406307 4.05E-170 dispersed
Bma13g01108 Bma-Chr13:44033288 Bma02g01308 Bma-Chr2:55213484 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58268 PF03514 GRAS 7.80E-132 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01108 - - jre:108985037 686.026