Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01112 ATGGGTGAGCCTGAGGTTGAAGTCGCTGAGACGATAAAAGATGAAACTAACCCGACAGAGAAAATCTCTGAAATTGTTAATGAGAAGAAAGGGGAGGCAAATGGCGGCGTAACTGAAATGGAAGAAGATCCAAAAGCTGATCCCAAGGTTGACATTATAAAGATGGATGATGACCCAGAAATAAAGGAAGACGAGACAAGCAAACAAATAAAAGATGATGAAGGGGAGAAACCAATTGTAGAAACAAAAGAAGAGAAAGAAGAAGCCATCCTTGTAGAAGAGAAAGAGAAGGATGAAATTGGAGTTGAAACTGAGGAAAAGAATATAGAGGTTGAAATTGAAACTAAGGAACAAAATGAGGATTGTGAAGTTGAATCTAATGAAAAAAATGAGGATTCTGGAGTTGAAACTAATGAAAAAAATGAGGAGTCTAGAGTCGAACCCAAGGAAAAGGATGAGGATTCTAGAATTGAATCTATGGAAAAAGATGAGGATCCTGAAGTCAAAACAAAGGAGGGAAAAGAAGATCCAGGGGTGCAGCTAATGGAAGAGGATACACATGATAACGGAATAGAAGAGATACAAGAGTTGAAGCAGGTTGATGAGGATAAGGAAGAAGAAGAAGAAGAGATGGAAGATGAGAAGGAAAAAGAGATTGAGGTGGAGAAGGGTTCAAAAAAACGTGGAAGGAGAAAGAGTTCAGGGAAAGTTAGAGAAAAGAAGAATAAATTGGAAGAGAAGGAACCAGAACAAAGGACACCCGTAACTGATCGCCCTGTACGTGAAAGAAAATCAGTCGAAAGGCTAGTAGCATCAATTGAAAGAGACAGTGGGAAGGAATTCCATATTCAGAAGGGCCCTGGTACACCTCTAAAGGATATACCAAATGTGGCATTCAAACTATCTAGGAAGAAGAGTGATGATACCTTTAAGCTGCTTCATTCTATTCTTTTTGGTAGGAGAGGAAAGGCATTTCAGGTGAAAGGCAATATATCTCGATTTTCTGGTTTTGTTTGGCAGGAAAAAGAGGAAAAACAAAGGAATAAAGTGAAAGAAAAATTTGATAAATGTACAAAAGAGAAGTTGCTGGAATTTTGTGATGTGCTTGACATCCAAGTTGCAAAAGCTACCACAAGGAAGGAAGATATTGTTGCTAAACTGATCGAGTTTTTGGTTGCTCCTCATCCAACAACGACTGTGCTTCTTGCGGAAACAGAAAAGACAAGCAGGGGACAGAAACGTAAAAGAGGAGTTAAAAGTAGTTCATCAACTCCTGGAAGCAATGATTCAAAACATTCATCAAAGAGTCGAAGAAAGAGTGAAGATATTTCTAAATCTGAGGTAACAAAGGATGTGTCTGATACTGGAGATGAGTCAGAAGAAGAAAAAGAAAGTGACGAAGAAATTGAAGAGCGATATCAAAATGGATCACCGGAAAAGCCTGAGGAAGATATGCATGAGGATTCAGAAAGTGAGAAGCAGAATGATCCAACAGATGAATCTGAAGAAGAAAAACCTAAGCGAAGGTCGAAAAGTTCTAGTAGAAAAAAGGAAACTGCTGGAAAATCTAGAAGTAAGAAAATTGTGGTTTCTCCGAGATCCAGTCCTCCGCCCAAGAAAACAGTAAAGAAAGCCTCTAAAAGCTCTACAGTTGATGAGGATGAAATAAGTCCTAAGGTATTCTCAAGGAAGAGGAGCAATGAAAAAGTCAAGGGTAGTGCCACAAATCCTAAAACTGCTCTGAAGGAGAAAGTTGGGAGAAAGGGTGGTAAGGGAAAGGACAAGCGGAAAGAAGAGAAATTGAGGTTAACTGATGATGAACTCAGAGATGCAATTTGTGAAATTCTTAAAGAAGTCGACTTCAATACAGCTACTTTCACGGATATTCTGAAGCAGCTTGCTAATCGATATAAAACTGACCTTACCCCAAGAAAGTCATCCATAAAGCTCATAATCCAAGAGGAGCTCACTAAACTAGCAGATGAGGCAGACGATGAAGAAGAAGAAGACGAAGAAGAAGCCGGAGGAGGGAAAGACGAAACACAGGCTAAAGGTCAAGAAGTGGAAACTTGA 2073 39.36 MGEPEVEVAETIKDETNPTEKISEIVNEKKGEANGGVTEMEEDPKADPKVDIIKMDDDPEIKEDETSKQIKDDEGEKPIVETKEEKEEAILVEEKEKDEIGVETEEKNIEVEIETKEQNEDCEVESNEKNEDSGVETNEKNEESRVEPKEKDEDSRIESMEKDEDPEVKTKEGKEDPGVQLMEEDTHDNGIEEIQELKQVDEDKEEEEEEMEDEKEKEIEVEKGSKKRGRRKSSGKVREKKNKLEEKEPEQRTPVTDRPVRERKSVERLVASIERDSGKEFHIQKGPGTPLKDIPNVAFKLSRKKSDDTFKLLHSILFGRRGKAFQVKGNISRFSGFVWQEKEEKQRNKVKEKFDKCTKEKLLEFCDVLDIQVAKATTRKEDIVAKLIEFLVAPHPTTTVLLAETEKTSRGQKRKRGVKSSSSTPGSNDSKHSSKSRRKSEDISKSEVTKDVSDTGDESEEEKESDEEIEERYQNGSPEKPEEDMHEDSESEKQNDPTDESEEEKPKRRSKSSSRKKETAGKSRSKKIVVSPRSSPPPKKTVKKASKSSTVDEDEISPKVFSRKRSNEKVKGSATNPKTALKEKVGRKGGKGKDKRKEEKLRLTDDELRDAICEILKEVDFNTATFTDILKQLANRYKTDLTPRKSSIKLIIQEELTKLADEADDEEEEDEEEAGGGKDETQAKGQEVET 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44255095 44260325 + Bma010242.1 Bma13g01112 93841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01112 690 PANTHER DEK PROTEIN 148 673 IPR044198 GO:0003677|GO:0006325
Bma13g01112 690 MobiDBLite consensus disorder prediction 581 603 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 656 690 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 199 216 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 469 509 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 238 269 - -
Bma13g01112 690 PANTHER PROTEIN DEK 148 673 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 454 468 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 545 571 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 431 453 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 402 603 - -
Bma13g01112 690 Pfam DEK C terminal domain 604 656 IPR014876 -
Bma13g01112 690 Coils Coil 649 673 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 659 676 - -
Bma13g01112 690 Coils Coil 190 224 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 31 50 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 1 21 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 55 198 - -
Bma13g01112 690 SUPERFAMILY DEK C-terminal domain 600 656 - -
Bma13g01112 690 Coils Coil 340 360 - -
Bma13g01112 690 MobiDBLite consensus disorder prediction 55 269 - -
Bma13g01112 690 Gene3D - 593 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01112 K17046 DEK; protein DEK - csv:101204393 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01088 Bma-Chr12:43171244 Bma13g01112 Bma-Chr13:44255095 2.08E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01112 Bma_Chr13 FPKM 0.467024 0.54821 0.501242 0.416945 1.440471 1.337294 1.192315 0.081074 0.0 0.0