Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01113 ATGGCGGACTCGGACAACGACTCTTATGGACACACAGCGACGAACAGCGAGCAATCCCCGAGGGAACAGGACAGACTGTTGCCTATTGCTAACGTGAGCAGGATAATGAAGAAGGCCTTACCGGCAAACGCGAAGATCTCCAAAGACGCGAAGGAGACGGTCCAGGAGTGCGTTTCCGAATTCATCAGCTTCGTAACCGGCGAGGCGTCGGACAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTACTCTGGGCGATGACGACGCTAGGGTTTGAGGACTACATGGAGCCTCTGAAGATATACCTGCAGAGGTTTAGGGAGATAGAAGGGGAGAAAACGGCCGTGGCGCGTGATAAAGACGGCGGTGGGAGGAGCGTAGGTGATGGTGGTAGTGGTGGGGCAGGTGCGGCAGGTGGGCCATACGGAAGCGGAATGGGGATGACGATGATGGGCGGTCAGCATCAACTTCATCAGGGACACGTGTACAGCGGAAGCGAATTCCATCAGACGGCTGTGATTAGTGGACAAAGTCGGGGCGGGCGTGGTTATTCCGGCCACGGATCCAATACGGGTCGGTCCAGGTAG 597 56.62 MADSDNDSYGHTATNSEQSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYMEPLKIYLQRFREIEGEKTAVARDKDGGGRSVGDGGSGGAGAAGGPYGSGMGMTMMGGQHQLHQGHVYSGSEFHQTAVISGQSRGGRGYSGHGSNTGRSR 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44263196 44263792 + Bma010243.1 Bma13g01113 93842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01113 198 MobiDBLite consensus disorder prediction 121 141 - -
Bma13g01113 198 MobiDBLite consensus disorder prediction 1 25 - -
Bma13g01113 198 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma13g01113 198 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bma13g01113 198 SUPERFAMILY Histone-fold 23 132 IPR009072 GO:0046982
Bma13g01113 198 Gene3D Histone, subunit A 13 132 IPR009072 GO:0046982
Bma13g01113 198 MobiDBLite consensus disorder prediction 1 22 - -
Bma13g01113 198 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bma13g01113 198 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bma13g01113 198 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bma13g01113 198 MobiDBLite consensus disorder prediction 174 198 - -
Bma13g01113 198 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma13g01113 198 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 171 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g01113 Bma14g00682 CCT
Bma10g00590 Bma13g01113 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01299 Bma-Chr2:55150543 Bma13g01113 Bma-Chr13:44263196 7.72E-72 dispersed
Bma03g00997 Bma-Chr3:10874010 Bma13g01113 Bma-Chr13:44263196 6.89E-55 dispersed
Bma10g01262 Bma-Chr10:44883412 Bma13g01113 Bma-Chr13:44263196 9.49E-43 dispersed
Bma12g00846 Bma-Chr12:39281855 Bma13g01113 Bma-Chr13:44263196 7.69E-74 dispersed
Bma14g00682 Bma-Chr14:7366950 Bma13g01113 Bma-Chr13:44263196 3.69E-72 transposed
Bma10g00590 Bma-Chr10:7262662 Bma13g01113 Bma-Chr13:44263196 1.70E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58269 PF00808 CBFD_NFYB_HMF 3.60E-27 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01113 K08065 - qsu:112015911 239.965