Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01116 TTCTCGTCGGAAATGGGGCTCCGGCAGGTTAGGACCGGAGCAACTGTTATTCTCGCCTTCATTCTCACACTCTCTGTTACTCATGCTCACAACATTACCACCATGTTGGCCAAGTACCCAGAGTATTCCACCTTCAACCACTACCTCTCCCTCACTCACCTCGCTTCCGACATCAACCACCGTAACACCATAACAGTCTGTGTCGTCAACAATGCCGCCATGAACGACCTCCTTTCCAAACATCTCTCCATCTACTCCATCAAAAACGTCCTCTCCCTTCACGTTCTCCTCGACTACTTCGGCACCAGAAAACTCCACCAGATCACTAATGGCAGCGCCTTGGCCGCCACCATGTTCCAAGCCAGCGGCTCCGCCCCGGACTCCTCCGGTTTCGTTAACATCACTAACCTCAGTGGAGGAAGAGTTGGCTTCGCGCCGAAGGAAAACGCCGGCGCTTTCGACGTCTTTTTCGTCAAATCTGTGGAGGAAAGGCCGTATAACATATCGGTTATTCAGATCAGTAAGATCCTCCTCTCCGACGTAGCGGCGGCCCCGACTCCCGCCCCAAGTCAGATAAACTTGACCAGTTTAATGTCTGCACATGGATGCAAGGCTTTTGCTGGCACTTTACTGGCTTCCGACGCCATAAAGACGTATGAAGACAATCAAAGCGGCGGGTTATCGGTTTTTTGCCCGGAAGATGATGCTTTCAAGGCGTTTTTGCCGAAATATAATAATTTGACGGCCACCGGAAAGACTTCGCTTCTGTTATACCACGCCATTCCGGTTTACATGTCCTTGCAGACTTTGAAGTCCAACAATGGTTTAATGAGCACGTTGGCAACGGATAGACCTAATAAGTACCATTTCACTGTCCAGAACGACGGAACGGACGTAACGTTAAAGACAAAACTCGTCACCTCAACCATCACCGGAACACTTTCCGATGAGCAGCCGGTGGTGATTTACACAATCAACAAGGTTTTGGAGCCGGAAGAGCTGTTTAAGGCCGACGCCCCAGCGCCAGCACCGGAGAAATCTGCTGACTCGCCAGAGGCTCAAAAGACGAAATCGCCTCCTATCTCTAACTCGGATTCTCCGGCTGACTCGCCCGATGATAACTCTGATGATCAAACCGCTGATGGTAACGGCGCTGCGAAATATAACGGCGCAGGGTTTGCAGGGCTGAGTTTGTTTCTATTATTTTCCAGTCTAATCTAA 1221 50.45 FSSEMGLRQVRTGATVILAFILTLSVTHAHNITTMLAKYPEYSTFNHYLSLTHLASDINHRNTITVCVVNNAAMNDLLSKHLSIYSIKNVLSLHVLLDYFGTRKLHQITNGSALAATMFQASGSAPDSSGFVNITNLSGGRVGFAPKENAGAFDVFFVKSVEERPYNISVIQISKILLSDVAAAPTPAPSQINLTSLMSAHGCKAFAGTLLASDAIKTYEDNQSGGLSVFCPEDDAFKAFLPKYNNLTATGKTSLLLYHAIPVYMSLQTLKSNNGLMSTLATDRPNKYHFTVQNDGTDVTLKTKLVTSTITGTLSDEQPVVIYTINKVLEPEELFKADAPAPAPEKSADSPEAQKTKSPPISNSDSPADSPDDNSDDQTADGNGAAKYNGAGFAGLSLFLLFSSLI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44279852 44281072 + Bma010246.1 Bma13g01116 93845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01116 406 Gene3D FAS1 domain 28 183 IPR036378 -
Bma13g01116 406 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 15 389 - -
Bma13g01116 406 SUPERFAMILY FAS1 domain 186 332 IPR036378 -
Bma13g01116 406 MobiDBLite consensus disorder prediction 353 369 - -
Bma13g01116 406 ProSiteProfiles FAS1/BIgH3 domain profile. 29 177 IPR000782 -
Bma13g01116 406 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 389 IPR033254 -
Bma13g01116 406 MobiDBLite consensus disorder prediction 339 386 - -
Bma13g01116 406 Pfam Fasciclin domain 41 110 IPR000782 -
Bma13g01116 406 Pfam Fasciclin domain 203 331 IPR000782 -
Bma13g01116 406 SUPERFAMILY FAS1 domain 36 177 IPR036378 -
Bma13g01116 406 Gene3D FAS1 domain 203 331 IPR036378 -
Bma13g01116 406 ProSiteProfiles FAS1/BIgH3 domain profile. 190 329 IPR000782 -
Bma13g01116 406 SMART fasc_3 65 180 IPR000782 -
Bma13g01116 406 SMART fasc_3 229 332 IPR000782 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01116 - - - fve:101301168 493.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01245 Bma13g01116 CCT
Bma13g01116 Bma14g00680 CCT
Bma07g01245 Bma13g01116 ECH
Bma13g01116 Bma14g00680 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00101 Bma-Chr7:1755169 Bma13g01116 Bma-Chr13:44279852 2.27E-37 dispersed
Bma07g01245 Bma-Chr7:47445880 Bma13g01116 Bma-Chr13:44279852 6.20E-72 dispersed
Bma13g01116 Bma-Chr13:44279852 Bma14g00680 Bma-Chr14:7350550 2.15E-177 dispersed
Bma13g01116 Bma-Chr13:44279852 Bma03g00666 Bma-Chr3:5439397 4.13E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g668 . Blo03g01484 Bda07g00412 Bda09g00439 Bpe09g00126 Bpe08g01090 . Bma13g01116 . Cmo06g00685 Cma01g01075 Cma09g01013 Car01g00951 . Sed07g2749 Cpe06g00821 Cpe02g00823 Bhi09g01777 Tan01g3193 Cmetu01g1443 . . Mch11g1277 . Cla10g00408 Cam10g0405 Cec10g0427 Cco10g0417 Clacu10g0412 Cmu10g1244 Cre10g0661 Cone6ag0009 . Cone14ag1220 Cone15ag1241 Lsi02g01825 . . Cme06g02759 . . . Bda12g00965 Bpe11g00589 . Bma07g01245 Bma14g00680 . Cmo01g01120 Cmo09g01015 . . . . . . . . . . . . . Cla09g02079 Cam09g2166 Cec09g2231 . . . . Lsi05g00498 . Chy01g01144 Cme01g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004217 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01116 Bma_Chr13 FPKM 19.467129 21.459496 28.408688 29.888573 49.202141 47.641041 55.022381 36.666599 40.800045 42.081837