Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01121 ATGAACCAGCGATGGCATGCTCGGCCGCTCTCGCGTGCTCTCTCACGTCTTCTCTCTCTTTCCTTCACCACCTCCGCTTCGCCCACCGCTGGGTCCTTCCCCCTTAAAAACGTCACCAAATCGAACTTCGCATCCGCTCTAGCGGAGCTCAGGCATCATGTCAAGGCTGCGGATTTTGTAGCTATTGACCTTGAAATGACAGGAATCACCAGCGCCCCTTGGCGTGAGTCCTTGGAGTTCGATCGGTTTGACGTTCGGTATTTCAAGCTCAAAGACTCAGCTGAGAAGTTCGCCGTCGTTCAATTAGGTGTCTGCCCATTTCGTTGGGATCAATCTAAGCAGTCCTTCATTGCCCATCCGCATAATTTCTATGTTTTTCCACGTCAAGAGCTTAAAGTTGATGGTCCTTCTCAAGATTTCCTCTGTCAAGCTTCTTCAATTGACTTCTTGGCAAAGTACCAGTTTGATTTCAATCTATGCATACGCGAAGGAATATCATATTTATCCAGAGCGCAAGAAGAGGAAGCGCTTAGGTGTATTAATTTGACATATAAAAATGAGTTATCAGATAATGTAAAGGACTTCAGAGATGGGGAAATTGTCAATATTGTTGATGTTCTGTTCAGTGAACGAATGAAAAACAAATTCAGTGAATGGCGTGATGGTTTATTGGAGAGAAGAAATGAAGAGGGCCAATTTAAGGAGGCATCAAATGGCTTGAAACGACCACTTGAAACCATTTTCTTCAAGATGCGTCCAGCTATTTGTTTGAATGGCTTCACTTCTCATCAGCAGAGGTTGATCAAGTTGGTGATTAGAAAGTATTTTGATGATCTTGCCTATGTTCGTGTTAACAGAGAGAATGAACATTCACAACAACTAGTCGTCTATACAGACTCCAATAGTGATAGAGACTCCCTTATGGAAGAGGTAAGGGATGAACAACTGAGAGTAGAAAAAATGAGAATACAAAGTGCCATAGGGATTCGCCACGTTATTGATCTCCTTTTGACTGAGCAAAAATTGATTGTTGGTCATAATTGCTTTCTCGATATTGCACACATATACAGCAAGTTCAATGGCCCTCTTCCTTCTACTGTGGAAGAATTTGTGTCCTCTGTTAGCAAATATTTAAAATACATAGTTGACACCAAATTGCTATTGAATGTTAGTGATGTACTTCAGCAACGGATGAAAAAGTCAAGCACATCACTCTCATCTGCATTTGCCTTGTTATGTCCACAATTTGCGCTTGGCTCGAAAAGTACTGGTCTAGGATTGAACTCCTGTATGCAAGTGGAGGTTCAAGTAGATGATTTGAGGTCATCCAACTGGAATTCTGGTGCAAAACACGAAGCTGGGTATGATGCATTCATGACTGGATGTGTCTTTGCCCAAGCATGTAGTCATCTAGGAGTTGGTTTCAAACTCCATTCATCTTCTGAAAATTTAGCTCTCAATGAAAAGCTCCAGAAGTACATCAATCATCTCTATCTCAGTGGATCAAACTCTGAAATCATTGAACTAAGTACTGGTAAAAGGGTTACTGAGTCTTTGACGCGTTATAACTCCAAAAGGTATCATTCGAGGATTTCATTCGAGAAAGTTGTTTTAATCTGGGGATTTTCCTCTAAATTGACGCCAAGGAAGATTAAAGAATGCCTCTGTAAAGTTTTTGGCTCAACTGCTGTCACATATATATACCAATTAGACGAAACTAGTGTATTTTTAGAATTCAGCCAGAGCAACTTGGTATCAGACTTTCTCCGTCTCAAAAAGTCGTTAGAAACGCAGAAGGATGCAATCGCAGTATTGCATCCTCTTGCCGAAGTTTTGAGCGGCGGACAAACTCGTGCTGCAGATTATGAAACTTATAAAGACATCTGCAGTTCACCCATTTCCAAAACCTTGTTTGCAGATCAGGCCGAGGCGGTGGGTTTTAAAGAATACACAAAGCTTTTGCAATCAAATGTGGAGAGGGAAGAGCAAGAGGTTATCAGCTTAGACAAAACAGATGATGATTTAATTCCAGAGAAGTGCATGGATTGGAAAGCACACAATGGGAAGGATGATGCCAGCCGTGTTCAATATGAAACCTTGCAATCTGTTTGTGCTGCTGACGGCAACTGA 2130 41.74 MNQRWHARPLSRALSRLLSLSFTTSASPTAGSFPLKNVTKSNFASALAELRHHVKAADFVAIDLEMTGITSAPWRESLEFDRFDVRYFKLKDSAEKFAVVQLGVCPFRWDQSKQSFIAHPHNFYVFPRQELKVDGPSQDFLCQASSIDFLAKYQFDFNLCIREGISYLSRAQEEEALRCINLTYKNELSDNVKDFRDGEIVNIVDVLFSERMKNKFSEWRDGLLERRNEEGQFKEASNGLKRPLETIFFKMRPAICLNGFTSHQQRLIKLVIRKYFDDLAYVRVNRENEHSQQLVVYTDSNSDRDSLMEEVRDEQLRVEKMRIQSAIGIRHVIDLLLTEQKLIVGHNCFLDIAHIYSKFNGPLPSTVEEFVSSVSKYLKYIVDTKLLLNVSDVLQQRMKKSSTSLSSAFALLCPQFALGSKSTGLGLNSCMQVEVQVDDLRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGVGFKLHSSSENLALNEKLQKYINHLYLSGSNSEIIELSTGKRVTESLTRYNSKRYHSRISFEKVVLIWGFSSKLTPRKIKECLCKVFGSTAVTYIYQLDETSVFLEFSQSNLVSDFLRLKKSLETQKDAIAVLHPLAEVLSGGQTRAADYETYKDICSSPISKTLFADQAEAVGFKEYTKLLQSNVEREEQEVISLDKTDDDLIPEKCMDWKAHNGKDDASRVQYETLQSVCAADGN 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44309334 44312990 - Bma010250.1 Bma13g01121 93850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01121 709 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 33 648 - -
Bma13g01121 709 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 33 648 - -
Bma13g01121 709 Gene3D - 282 513 IPR036397 GO:0003676
Bma13g01121 709 Gene3D - 37 262 IPR036397 GO:0003676
Bma13g01121 709 Pfam CAF1 family ribonuclease 38 464 IPR006941 -
Bma13g01121 709 Coils Coil 304 324 - -
Bma13g01121 709 SUPERFAMILY Ribonuclease H-like 35 475 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01121 K01148 PARN, PNLDC1; poly(A)-specific ribonuclease [EC:3.1.13.4] - qsu:111986552 860.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g01121 Bma-Chr13:44309334 Bma15g00723 Bma-Chr15:13325689 4.70E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g677 . . . . Bpe09g00121 . . Bma13g01121 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1229 Cone15ag1253 . Csa03g00422 . Cme06g02768 . . . Bda12g00970 . . . . . . . . . . . Cpe14g00784 . Bhi11g00474 . . . . . . . . . . . . . . . Chy06g01891 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009803 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01121 Bma_Chr13 FPKM 0.484663 0.0 0.910602 0.823984 9.982349 11.166546 9.226307 0.605112 0.468832 0.416766