Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01127 ATAATGCAGTTTGAAGATGTGGAGTACAGGGTGAGAATGAGACATAGCACAAGCAAAGAGAGAGGCAGATCAAAGGAAGAGAAATACAAGCAAATTCTCAAGGGCATAACAGGAGGGATTGGCCCTGGGGAGGTTCTTGCTCTGATGGGTCCCTCAGGCAGTGGCAAGACAACCTTATTGAAGGTTCTCGGCGGGAGATTACTCAGCAATGTCAAAGGAAACATAACTTATAACGACATCTCCTACACGCCGGCCCTCAAACGACGTATCGGTTTTGTCACGCAAGATGACGTGCTCTTCCCGAATCTAACAGTCGAAGAAACATTACTTTTCTCGGCCTCCTTGAGGCTCCCGAGCGACATGTCTCAACAAGAAAAGTACGGGCGGGTGGAGACAATTGTGAAGGAGCTTGGCCTCGAGAGATGTCGTCATACTAGAGTTGGCGGGGGGTTCATGAATGGAATATCTGGAGGAGAACGAAAAAGAACGAGCATTGGCTATGAAGTTCTAGTCGATCCGTCGTTGTTATTGCTAGACGAACCAACTTCCGGCCTCGACTCCACCTCTGCAAATAGGCTCATATCAGTTCTCCAAGGACTAGCTCAACAGGCTGGCCGGACAATAGTTACGACAATACACCAGCCATCGAGCCGGACATTTCACATGTTTGATAAACTTCTTTTGATATCCGAAGGGCAGCCGGTGTACTACGGGAAGGCTAGAGACTCGAGTGACTATTTTTCATCCTTGAGATTCATACCCGAAATTCCAATGAATCCTGCAGAGCTTTTGCTCGATTTAGCAACCGGACAAGTCAACAATATTCGAGTTCCCGACGATTTGTCAGCAGCTCGAGAGGATGCAGGCTCCGAAAAAGACGTGATCAAGTATCTGCAAATTAAATACAAAACTCTGCTGGACCCGAAAACAAACGACGAAAATCGAACGGCAACGGCCCCAGAGCATCTTCAGGCAGCGATTCAGGTGAAGAAAGACTGGACAATTTCATGGTGGAAACAGTTCATGATAGTCTCAAAAAGAACATTCAAGGAGAGACAGAGAGATTACTTTGATAAAATAAGACTAATTCAAGCAGTTGGAGTTGCAGTTCTGTTAGGACTTCTATGGTGGAAATCCAGTATTGATACAGAAGCTCATCTGAGAGACCAGGTCGGTTTGATGTTCTACGTATGCATATTTTGGACGTCCACGTCGATTTTCGGAGCGGTTTATGTTTTCCCGTTCGAGAAAATTTATCTGGTGAAAGAACGGAAGGCAGATATGTATCGATTGAGCGTTTATTACGTATGCAGCACGATGTGCGACATGGTAGCTCATGTGCTTTATCCGACATTTTTCATGATCATACTCTACTTCATGGCTGGTTTCAAAAGAACACTCCCCTGTTTCTTCTTTACCCTGTTTGCCATCCTTCTTGTAGCTGTTACAAGCCAAGGGGCAGGGGAGCTGTTTGGAGCTGCAGTTCTGAGTATCAAAAGGGCAGGAACGGTGGCTTCTCTCATACTGATGCTGTTTCTCTTAACCGGAGGTTATTATGTGCAGCATATTCCGAAGTTCATGCAGTGGCTCAAGTACTTATCATTTATGTACTATGGGTTTAGGCTTATGTTGAAAGTTCAATATTCAGGAGATGATTTGTATGAATGTGGAAGCAGAGGAGGATGCAAGCCTCTTCAGAGCTCTCCTTCTTTTGATACTATCAACTTGAATGGTGGATTGCAAGAAGTTTGGATTTTGCTCGCTATGGCTCTCGTTTATCGATTACTCGCTTATTTTGCGTTGCGTAATCGGATCACTATTTCCAATCTTTAA 1833 44.9 IMQFEDVEYRVRMRHSTSKERGRSKEEKYKQILKGITGGIGPGEVLALMGPSGSGKTTLLKVLGGRLLSNVKGNITYNDISYTPALKRRIGFVTQDDVLFPNLTVEETLLFSASLRLPSDMSQQEKYGRVETIVKELGLERCRHTRVGGGFMNGISGGERKRTSIGYEVLVDPSLLLLDEPTSGLDSTSANRLISVLQGLAQQAGRTIVTTIHQPSSRTFHMFDKLLLISEGQPVYYGKARDSSDYFSSLRFIPEIPMNPAELLLDLATGQVNNIRVPDDLSAAREDAGSEKDVIKYLQIKYKTLLDPKTNDENRTATAPEHLQAAIQVKKDWTISWWKQFMIVSKRTFKERQRDYFDKIRLIQAVGVAVLLGLLWWKSSIDTEAHLRDQVGLMFYVCIFWTSTSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTMCDMVAHVLYPTFFMIILYFMAGFKRTLPCFFFTLFAILLVAVTSQGAGELFGAAVLSIKRAGTVASLILMLFLLTGGYYVQHIPKFMQWLKYLSFMYYGFRLMLKVQYSGDDLYECGSRGGCKPLQSSPSFDTINLNGGLQEVWILLAMALVYRLLAYFALRNRITISNL 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44360193 44363195 + Bma010256.1 Bma13g01127 93856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01127 610 Gene3D - 18 249 IPR027417 -
Bma13g01127 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 247 IPR027417 -
Bma13g01127 610 Pfam ABC-2 type transporter 213 274 IPR043926 GO:0140359
Bma13g01127 610 CDD ABCG_EPDR 18 238 - -
Bma13g01127 610 Pfam ABC transporter 33 183 IPR003439 GO:0005524
Bma13g01127 610 SMART AAA_5 42 233 IPR003593 -
Bma13g01127 610 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 604 - -
Bma13g01127 610 Pfam ABC-2 type transporter 340 548 IPR013525 GO:0016020|GO:0140359
Bma13g01127 610 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 2 604 - -
Bma13g01127 610 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 256 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01127 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - zju:107416341 995.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g01127 Bma-Chr13:44360193 Bma15g00090 Bma-Chr15:1006991 1.34E-150 dispersed
Bma13g01127 Bma-Chr13:44360193 Bma10g00508 Bma-Chr10:5952397 1.16E-177 transposed
Bma13g01127 Bma-Chr13:44360193 Bma01g02025 Bma-Chr1:74988134 1.31E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g710 . . . . Bpe09g00114 . . Bma13g01127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00875 . Bda12g00978 . . . . . . . . . . . Cpe14g00776 . . . . . . . . . . . . . . . Lsi05g00513 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011919 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01127 Bma_Chr13 FPKM 2.033935 2.481854 2.37852 3.143922 3.307181 3.385759 3.426105 3.41369 3.736032 4.250215