Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01129 ATGACAACTGCTGCTCGACCTACGTGGGCACCTGCAAAAGGTGGAAATGAACAAGGCGGTACTCGAATTTTTGGGCCGTCTCAGAAGTACTCCTCCAGAGACCTAGCTGCCCACACAAATCTAAAACCTAGAAAGGATGGGCAAGACACTCAGGATGAAGTGCAGAAGAGGAATCTCCGTGACGAGCTGGAAGATCGTGAGCGGCGACATTTTTCGTCGAAGAAGTCTTTTAGTGATGACAGAGAACACAGGAAAGGAGGTCATTTTCTTTTAGAAGGAGCAAAGAGGGACACAGAAGATCGCATCATTCCACGAAGTGTAGATGCTGATGATTCTGATGTAGAAGTCAGAAGTGACAATGAGAGCGATGACGATGACGATGAGGATGACACAGAAGCTCTATTGGCTGAGTTGGAACAGATAAAGAAGGAAAGGGCCGAAGAGAAGCTCTGCAAGGAACGGCAACAACGGGAGGAAGAGCTTATGGCCAAGGAATCGGAGTTGCTCCGAGGAAATCCACTACTTAACGAGCCGACATCTTTTAATGTAAAAAGAAGGTGGGATGATGATGTTGTGTTTAAGAACCAAGCTCGAGGGGAAACAAAGGCTCCTAAGCGGTTCATAAACGACACGATCAGAAATGACTTCCATAGGAATTCTTGCATAAGTACATGA 675 46.37 MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDLAAHTNLKPRKDGQDTQDEVQKRNLRDELEDRERRHFSSKKSFSDDREHRKGGHFLLEGAKRDTEDRIIPRSVDADDSDVEVRSDNESDDDDDEDDTEALLAELEQIKKERAEEKLCKERQQREEELMAKESELLRGNPLLNEPTSFNVKRRWDDDVVFKNQARGETKAPKRFINDTIRNDFHRNSCIST 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44388390 44390163 - Bma010258.1 Bma13g01129 93858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01129 224 Coils Coil 138 167 - -
Bma13g01129 224 Pfam Cwf15/Cwc15 cell cycle control protein 1 218 IPR006973 GO:0000398|GO:0005681
Bma13g01129 224 MobiDBLite consensus disorder prediction 21 35 - -
Bma13g01129 224 MobiDBLite consensus disorder prediction 38 113 - -
Bma13g01129 224 PANTHER CELL CYCLE CONTROL PROTEIN CWF15 1 219 IPR006973 GO:0000398|GO:0005681
Bma13g01129 224 MobiDBLite consensus disorder prediction 114 130 - -
Bma13g01129 224 MobiDBLite consensus disorder prediction 1 130 - -
Bma13g01129 224 PANTHER - 1 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01129 K12863 CWC15; protein CWC15 - zju:107416386 343.584
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00599 Bma13g01129 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00605 Bma-Chr10:7585565 Bma13g01129 Bma-Chr13:44388390 7.15E-98 dispersed
Bma10g00599 Bma-Chr10:7315744 Bma13g01129 Bma-Chr13:44388390 1.24E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g712 . . . . Bpe09g00112 . Bma10g00599 Bma13g01129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00877 Bda05g00675 . . . . . . . . . . . . Cpe14g00775 . . . . . . . . . . . . . . . Lsi05g00514 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011554 1 1 2 3 1 1 2 1 1 1 0 0 0 1 1 1 0 1 2 0 1 1 1 1 1 0 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01129 Bma_Chr13 FPKM 38.920479 40.661961 0.0 0.0 4.133079 3.550797 3.354454 0.0 0.0 0.069454