Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01130 ATGAATACCCATCATTTTCTCGGCCCTGGTTTACTGTATAATTCCAGCGCTACTGTTTTATCAAATCCTCCCGCCATTGATCATCACAGAGCTCGAGCCCTAACTTCTTCGTTCTGGGTCAGATTGGCAGTAAAAATATCTCGGGCAAGATGGTTCAATTTCTTGAGAAGAGTATTCCATTACCAAAATGGTTCGAGATCCGATCTCGGGTCGAATCCTTTCAACTCGAGCACTTGGATGATGCTGGAGCTTATAGCTTTGTTTCTTCAACTAAGCATTTCCGCATTCATCTTGGCCATTTCAAAGAGAGAGAAGCCAGTTTGGCCTATGAGAGTATGGATTATTGGTTATAACATTAGCTGTTTCCTCAGTCTGTTGCTACTCTATGGTCGTCATAGGCGGCTTCTTCTGTCTCAAACCGATGATTTCAACCTTTTGGACATCGAGCAGCAGAGGAGTAGTGAAGAATCGAGGATGTTGCATTTGATGAACAAATGTTGTACGACACTGGAGCTATTTTTCGCAATATGGTTCGTTATGGGCAATGTTTGGGTGTTCGATTCTCGATTCGAGTCTTTCACGATGGCCCCGAAGCTTCATGTTCTTTGCATCTCTCTCCTAGCTTGGAATGCCATTTGCTATTCTTTCCCTTTCCTTCTCTTCCTTCTGCTCTGCTGTTGTGTGCCATTGATTAGTACCCTTCTTGGCTACAACATGAATATGGGCTCCATTGATAGAGGAGCTTCCGACGATCAACTTTCCCGGATTTCGAGCTGGCGATACAAAACGGGAGATTCCAAATCGGAGCTCGGAATCATTCCTACTGAAGATCCAGAATGTTGTATTTGCCTTGCGAAGTATAAAGACCGGGAAGAAATCCGGGAGTTGCCGTGTTCGCATGTTTTTCATCTCAACTGTGTGGATCAATGGCTTAGAATTATATCAATTTGTCCTCTTTGCAAGCAAGAACTAGAGAGATAA 981 43.63 MNTHHFLGPGLLYNSSATVLSNPPAIDHHRARALTSSFWVRLAVKISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMMLELIALFLQLSISAFILAISKREKPVWPMRVWIIGYNISCFLSLLLLYGRHRRLLLSQTDDFNLLDIEQQRSSEESRMLHLMNKCCTTLELFFAIWFVMGNVWVFDSRFESFTMAPKLHVLCISLLAWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMGSIDRGASDDQLSRISSWRYKTGDSKSELGIIPTEDPECCICLAKYKDREEIRELPCSHVFHLNCVDQWLRIISICPLCKQELER 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44393231 44394738 + Bma010259.1 Bma13g01130 93859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01130 326 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 15 325 - -
Bma13g01130 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 325 IPR013083 -
Bma13g01130 326 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 325 - -
Bma13g01130 326 Pfam Ring finger domain 279 321 IPR001841 -
Bma13g01130 326 SUPERFAMILY RING/U-box 274 324 - -
Bma13g01130 326 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Bma13g01130 326 SMART ring_2 280 320 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g01130 Bma14g00672 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g01130 Bma-Chr13:44393231 Bma14g00672 Bma-Chr14:7287258 1.21E-128 dispersed
Bma13g01130 Bma-Chr13:44393231 Bma01g01300 Bma-Chr1:17778344 8.53E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01130 - - qsu:112039218 472.626