Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01140 ATGGAGGAGGCCGCCGTAATCCCCTTCAAGAACCTCCATAGCCGAGAGTATCAAAACCACAAGAAGAAGGTGCATTCCGTAGCTTGGAATTGCACTGGCACGAAGCTCGCTTCCGGTTCTGTTGATCAAACAGCTCGAGTTTGGCATATTGAGCCTCACGGACATAGTAAGGTTAAGGATATTGAGTTAAAAGGGCACACAGACAGTGTAGATCAGTTATGTTGGGATCCCAAACATGCTGATCTTATTGCAACTGCTTCGGGTGACAAGACTGTTCGTCTGTGGGATGCTCGTAGTGGGAAATGCTCTCAGCAATCAGAACTTAGTGGAGAGAATATTAATATCACATATAAACCTGATGGAACACATGTGGCTGTCGGCAATAGGGATGATGAATTAACAATATTGGATGTTAGAAAGTTTAAGCCAATTCACAAGCGCAAGTTCAATTATGAGGTTAATGAGATTGCTTGGAACATGACAGGAGAGTTATTTTTCCTGACAACGGGAAATGGTACCGTTGAGGTTCTAGCTTACCCTTCTCTGCAACCACTTGACACCCTGATGGCTCATACGGCTGGTTGTTATTGCATTGCGATAGACCCAGTGGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCTTAGTCAGTCTTTGGAATATCTCGGAGATGCTATGCATGCGAACATTTACAAAACTTGAATGGCCTGTGCGGACAATAAGCTTCAATCATACTGGAGATTACATAGCTTCTGCTAGTGAAGACTTGTTCATTGATATATCTAATGTTCAAACTGGACAAACAGTTCATCAAATTCCATGCCGGGCTGCTATGAATAGTGTGGAATGGAATCCGAAATACAATTTACTTGCATATGCTGGAGATGACAAAAACAAGTACCAGGCTGACGAAGGTGTTTTTCGAATTTTTGGGTTTGAGAGTGCTTAA 948 42.72 MEEAAVIPFKNLHSREYQNHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHSKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQSELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGELFFLTTGNGTVEVLAYPSLQPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWNISEMLCMRTFTKLEWPVRTISFNHTGDYIASASEDLFIDISNVQTGQTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFESA 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44606234 44609414 - Bma030626 Bma13g01140 93869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01140 315 ProSitePatterns Trp-Asp (WD) repeats signature. 83 97 IPR019775 -
Bma13g01140 315 Pfam Anaphase-promoting complex subunit 4 WD40 domain 235 284 IPR024977 -
Bma13g01140 315 SMART WD40_4 140 178 IPR001680 GO:0005515
Bma13g01140 315 SMART WD40_4 223 262 IPR001680 GO:0005515
Bma13g01140 315 SMART WD40_4 181 220 IPR001680 GO:0005515
Bma13g01140 315 SMART WD40_4 265 303 IPR001680 GO:0005515
Bma13g01140 315 SMART WD40_4 56 96 IPR001680 GO:0005515
Bma13g01140 315 SMART WD40_4 10 49 IPR001680 GO:0005515
Bma13g01140 315 Gene3D - 150 310 IPR015943 GO:0005515
Bma13g01140 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 17 51 IPR001680 GO:0005515
Bma13g01140 315 Pfam WD domain, G-beta repeat 15 48 IPR001680 GO:0005515
Bma13g01140 315 Pfam WD domain, G-beta repeat 183 220 IPR001680 GO:0005515
Bma13g01140 315 Pfam WD domain, G-beta repeat 62 96 IPR001680 GO:0005515
Bma13g01140 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 101 - -
Bma13g01140 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 105 IPR001680 GO:0005515
Bma13g01140 315 PRINTS G protein beta WD-40 repeat signature 36 50 IPR020472 -
Bma13g01140 315 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Bma13g01140 315 PRINTS G protein beta WD-40 repeat signature 83 97 IPR020472 -
Bma13g01140 315 CDD WD40 15 258 - -
Bma13g01140 315 PANTHER THO COMPLEX SUBUNIT 3 THO3 8 313 IPR040132 GO:0006406
Bma13g01140 315 SUPERFAMILY WD40 repeat-like 10 297 IPR036322 GO:0005515
Bma13g01140 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Bma13g01140 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 17 51 - -
Bma13g01140 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 222 - -
Bma13g01140 315 Gene3D - 2 149 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01140 K12880 THOC3; THO complex subunit 3 - egr:104449080 629.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g01140 Bma-Chr13:44606234 Bma02g00179 Bma-Chr2:1622416 6.05E-06 dispersed
Bma13g01140 Bma-Chr13:44606234 Bma15g00603 Bma-Chr15:7614787 1.00E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g735 . . . . . . . Bma13g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00986 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00518 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011335 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01140 Bma_Chr13 FPKM 12.028829 12.80466 4.582819 3.88176 3.227583 2.581677 2.484919 4.968878 4.050914 4.61461