Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01142 CCGGCAGCCATGGCAGCGACCTCCTCCGCCGCCTTATTCTCCGCCCCGGCCTTCTCTTCTACCTCCCAAAAACACCACCTCACCCCCTCTAACCTCTCCTTTCAAGGTCTCAGACCCCTCCCCAAGGTCGCCGCGCCCACCAAGCTCAGCCTGGCCACCGGCTCAACTAAACCCAGAAGGGTTTCCCCGGTCAGGGCCGAGCTGAACACGTCTCTGGTCATCAGCCTCAGCACCGGACTGTCCCTCTTCTTGGGTCGGTTCGTCTTCTTTAATTTCCAGAGGGAGAACGTGGCAAAACAAGTGCCGGAGCAAAACGGGTTGACGCACTTCGAAGCCGGCGACACCAGAGCCAAAGAGTACGTCAGCCTACTCAAATCAAACGACCCTGTCGGGTTCAACATCGTGGATGTTCTCGCTTGGGGCTCCATCGGCCATATAGTTGCTTACTACATCTTGGCCACCTCTAGCAATGGCTACGATCCGAGCTTCTTCTGA 495 57.58 PAAMAATSSAALFSAPAFSSTSQKHHLTPSNLSFQGLRPLPKVAAPTKLSLATGSTKPRRVSPVRAELNTSLVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44618263 44618757 + Bma010274.1 Bma13g01142 93871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01142 164 TIGRFAM PS_I_psaG_plant: photosystem I reaction center subunit V 73 160 IPR017494 GO:0009522|GO:0009535|GO:0015979
Bma13g01142 164 Gene3D - 70 164 IPR023618 GO:0009522|GO:0015979
Bma13g01142 164 ProSitePatterns Photosystem I psaG and psaK proteins signature. 131 148 IPR000549 GO:0009522|GO:0015979|GO:0016020
Bma13g01142 164 Pfam Photosystem I psaG / psaK 69 159 IPR000549 GO:0009522|GO:0015979|GO:0016020
Bma13g01142 164 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 6 164 IPR016370 -
Bma13g01142 164 PIRSF PsaK 4 164 IPR016370 -
Bma13g01142 164 PANTHER BNAC03G70700D PROTEIN 6 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01142 K08905 psaG; photosystem I subunit V - jre:108985982 242.276
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g784 . . . . . . . Bma13g01142 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1271 Cone15ag1297 . . . . . Blo10g00889 . Bda12g00989 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011324 1 1 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 2 2 1 1 1 1 1 1 1 0 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01142 Bma_Chr13 FPKM 13.142858 9.431407 9.899548 10.099933 3.437472 0.0 4.847656 25.677568 32.536816 35.589336