Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01143 ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACACCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTTTCTACCTCCGCTGCCAGCCCCACCAGAACGTACCCTTCTGCTGCAGCTAAGTACGAGGATGTTGCTCAAAGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCGTTTGGAACTAAATTCGCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTGTTTGTGGAAGTCACCACTCGCGGCGGCCTTGAAAAGGTTATAAGAGATCGTAGATGGAAGGAACTAATCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCTTCATTTGTGTTACGGAAGTACTACCTATCGTTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACTGAACATCGAAATGTCTCCTCCTGGTAATCATAACAACACCTTGATGTTTTGTCTTGTGGATTATGAGTTCTATTGTTCAGATCTGCAGATCGGCTCTACGGTGACAGGAACCATAGATGGAAAATTCGATGATGGATATTTAATTACCGTTAACATTGGATCGAAGCAATTTAAAGGTGTGTTATATCATGCACCTGTCACAGTTTCTGAAAATAATATGGCCTTGTCTACTCGTCGGGGCCGTAAACGATCTAGGCTGGAATCAAGGGATCCAGACCGGCCCAAATCAAACAGGAGTGGATACAACTTCTTCTTCGCCGAGCATTATGCAAGGCTGAAACCTTTGTATCATGGGAAAGAGAGGGCTATTAGCAAGAAAATTGGTGTCCTGTGGAACAATCTCACTGAGGCCGAAAAGAAGATATATCAAGAAAAAGGGTTGAAGGACAAGGAAAGATACAAGACAGAAATGCTGGAATACAAATCCTCAAATGCCCCGGCGCCTAAATAG 990 44.44 MSTSLNQHLSENPIIAESPPPTSSHHQHRQELLSERPNGPLPVSTSAASPTRTYPSAAAKYEDVAQSSELFWEKLKGFHESFGTKFAVPTVGGKSLDLHRLFVEVTTRGGLEKVIRDRRWKELIGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKLNIEMSPPGNHNNTLMFCLVDYEFYCSDLQIGSTVTGTIDGKFDDGYLITVNIGSKQFKGVLYHAPVTVSENNMALSTRRGRKRSRLESRDPDRPKSNRSGYNFFFAEHYARLKPLYHGKERAISKKIGVLWNNLTEAEKKIYQEKGLKDKERYKTEMLEYKSSNAPAPK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44620708 44624163 + Bma010275.2 Bma13g01143 93872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01143 329 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
Bma13g01143 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 48 325 - -
Bma13g01143 329 SMART bright_3 66 157 IPR001606 GO:0003677
Bma13g01143 329 CDD ARID_HMGB9-like 67 152 IPR045303 GO:0003677
Bma13g01143 329 Pfam HMG (high mobility group) box 254 321 IPR009071 -
Bma13g01143 329 SUPERFAMILY HMG-box 251 323 IPR036910 -
Bma13g01143 329 Gene3D - 53 166 IPR036431 GO:0003677
Bma13g01143 329 Pfam ARID/BRIGHT DNA binding domain 69 152 IPR001606 GO:0003677
Bma13g01143 329 SUPERFAMILY ARID-like 63 167 IPR036431 GO:0003677
Bma13g01143 329 CDD HMGB-UBF_HMG-box 254 317 - -
Bma13g01143 329 SMART ARID_2 62 152 - -
Bma13g01143 329 MobiDBLite consensus disorder prediction 1 51 - -
Bma13g01143 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 48 325 - -
Bma13g01143 329 Gene3D High mobility group box domain 237 328 IPR036910 -
Bma13g01143 329 MobiDBLite consensus disorder prediction 236 255 - -
Bma13g01143 329 MobiDBLite consensus disorder prediction 233 255 - -
Bma13g01143 329 SMART hmgende2 253 322 IPR009071 -
Bma13g01143 329 MobiDBLite consensus disorder prediction 1 27 - -
Bma13g01143 329 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 254 321 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02389 Bma-Chr1:81465823 Bma13g01143 Bma-Chr13:44620708 7.60E-65 dispersed
Bma04g01053 Bma-Chr4:19598462 Bma13g01143 Bma-Chr13:44620708 4.25E-72 dispersed
Bma13g01143 Bma-Chr13:44620708 Bma05g01290 Bma-Chr5:52272695 5.05E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58270 PF01388 ARID 4.50E-17 CL0123 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01143 - - qsu:111998428 399.823