Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01143 ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACACCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTTTCTACCTCCGCTGCCAGCCCCACCAGAACGTACCCTTCTGCTGCAGCTAAGTACGAGGATGTTGCTCAAAGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCGTTTGGAACTAAATTCGCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTGTTTGTGGAAGTCACCACTCGCGGCGGCCTTGAAAAGGTTATAAGAGATCGTAGATGGAAGGAACTAATCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCTTCATTTGTGTTACGGAAGTACTACCTATCGTTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACTGAACATCGAAATGTCTCCTCCTGGTAATCATAACAACACCTTGATGTTTTGTCTTGTGGATTATGAGTTCTATTGTTCAGATCTGCAGATCGGCTCTACGGTGACAGGAACCATAGATGGAAAATTCGATGATGGATATTTAATTACCGTTAACATTGGATCGAAGCAATTTAAAGGTGTGTTATATCATGCACCTGTCACAGTTTCTGAAAATAATATGGCCTTGTCTACTCGTCGGGGCCGTAAACGATCTAGGCTGGAATCAAGGGATCCAGACCGGCCCAAATCAAACAGGAGTGGATACAACTTCTTCTTCGCCGAGCATTATGCAAGGCTGAAACCTTTGTATCATGGGAAAGAGAGGGCTATTAGCAAGAAAATTGGTGTCCTGTGGAACAATCTCACTGAGGCCGAAAAGAAGATATATCAAGAAAAAGGGTTGAAGGACAAGGAAAGATACAAGACAGAAATGCTGGAATACAAATCCTCAAATGCCCCGGCGCCTAAATAG 990 44.44 MSTSLNQHLSENPIIAESPPPTSSHHQHRQELLSERPNGPLPVSTSAASPTRTYPSAAAKYEDVAQSSELFWEKLKGFHESFGTKFAVPTVGGKSLDLHRLFVEVTTRGGLEKVIRDRRWKELIGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKLNIEMSPPGNHNNTLMFCLVDYEFYCSDLQIGSTVTGTIDGKFDDGYLITVNIGSKQFKGVLYHAPVTVSENNMALSTRRGRKRSRLESRDPDRPKSNRSGYNFFFAEHYARLKPLYHGKERAISKKIGVLWNNLTEAEKKIYQEKGLKDKERYKTEMLEYKSSNAPAPK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44620708 44624163 + Bma010275.2 Bma13g01143 93872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01143 329 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
Bma13g01143 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 48 325 - -
Bma13g01143 329 SMART bright_3 66 157 IPR001606 GO:0003677
Bma13g01143 329 CDD ARID_HMGB9-like 67 152 IPR045303 GO:0003677
Bma13g01143 329 Pfam HMG (high mobility group) box 254 321 IPR009071 -
Bma13g01143 329 SUPERFAMILY HMG-box 251 323 IPR036910 -
Bma13g01143 329 Gene3D - 53 166 IPR036431 GO:0003677
Bma13g01143 329 Pfam ARID/BRIGHT DNA binding domain 69 152 IPR001606 GO:0003677
Bma13g01143 329 SUPERFAMILY ARID-like 63 167 IPR036431 GO:0003677
Bma13g01143 329 CDD HMGB-UBF_HMG-box 254 317 - -
Bma13g01143 329 SMART ARID_2 62 152 - -
Bma13g01143 329 MobiDBLite consensus disorder prediction 1 51 - -
Bma13g01143 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 48 325 - -
Bma13g01143 329 Gene3D High mobility group box domain 237 328 IPR036910 -
Bma13g01143 329 MobiDBLite consensus disorder prediction 236 255 - -
Bma13g01143 329 MobiDBLite consensus disorder prediction 233 255 - -
Bma13g01143 329 SMART hmgende2 253 322 IPR009071 -
Bma13g01143 329 MobiDBLite consensus disorder prediction 1 27 - -
Bma13g01143 329 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 254 321 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01143 - - - qsu:111998428 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02389 Bma-Chr1:81465823 Bma13g01143 Bma-Chr13:44620708 7.60E-65 dispersed
Bma04g01053 Bma-Chr4:19598462 Bma13g01143 Bma-Chr13:44620708 4.25E-72 dispersed
Bma13g01143 Bma-Chr13:44620708 Bma05g01290 Bma-Chr5:52272695 5.05E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g785 . . . . . . . Bma13g01143 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1272 Cone15ag1298 . . . . . . . Bda12g00990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58270 PF01388 ARID 4.50E-17 CL0123 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01143 Bma_Chr13 FPKM 4.200608 4.335142 13.682628 15.294431 7.091775 5.734842 5.892436 4.20464 0.0 5.148369