Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01145 ATGTTGGGAGGGGAATGTAGCGATCAGAATCATCTGCTTAGATCGACGGAGGATCATGTAGAGGATAATGACTTGGAAGCTCGTAATGGAGACGGTGATGCAGATGGAGTCCAAAGCCGCAATTACGGGAGTGGTAGTGGAAGATTAGCCGGAGGCTTTATGGATCTGTTTAAGCATTTGAATAGAGGGAGCTTCTCTGGACGCCGTCACAGCTTCAAGCGTCTCGACGGCAATCGAATTAACGATTCCGCATCTCCCGGTGGTAGAGGTGTGGATAGTCATCATCTTCACTCTTATAATGATGACTTTCATCTTCGGCTTCATCATGCCCCTACTGTCAACACCGCCGGTGAGGCCGATTCGGACGACATTCTAGACGACACCGCCCCACCGGAGTGGGTGTTGCTCCTTATTGGCTGCCTTGTTGGCCTCGCAACAGGTCTATGTGTTGCTGCATTTAACAAAGGGGTGCATGTAATTCATGAATGGGCATGGGCCGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGGTTACAGAGATTAGCTGATACTTGGCATCGCATTCTTCTAATACCAGTCGCTGGAGGTGTCATTGTTGGCATGATGCATGGCTTAGTTGAAATACTCTACGAAATCAAGCAATCCAGTCCTTCTCAAAGGCCAGGATTTGATTTACTTGCTGGAGTCTTTCCCACGGTAAAGGCCATTCAGGCAGCTATCACTTTGGGTACTGGTTGTTCATTAGGTCCCGAAGGACCTAGTGTGGATATTGGAAAATCTTGTGCAAATGGGTTCTATTTAATGATGGGAAACAACAGTGAAAGGATAAAAATAGCCTTTGTTGCTGCTGGTGCAGCTGCTGGAATAGCTTCAGGCTTTAATGCAGCTGTTGCTGGTTCCTTCTTTGCTATAGAGACTGTTTTAAGGTCCCAACGAGCTGAAAATTCACCACCATTTACAACTGCAATGATTATTCTTGCTTCTGTTATCTCATCTACCGTTTCAAATGTTCTACTTGGGACACAGTCAGCTTTTACTGTTCCTACATATGATTTGAAGTCTGCGGCAGAATTACCTTTATACCTGATTTTGGGCATGCTGTGCGGAGTAGTGAGTGTGGCTGTGACTCGGTTAGTCAGTTGGTTTCATAAATCATTTGACCTTATCAAGGACAGATTTAGCCTCCCTGCTGTTGTCTGTCCTGCTTTAGGCGGTTTAGGAGCTGGAATAATTGCTCTCAAGTATCCAGGAATTTTGTATTGGGGCTTCACAAATGTGGAAGAAATCCTACATACTGGAAAGAGCGCCTCTGCTCCTGGAATCTGGTTGTTAACTCAATTAGCTGCGGCGAAGGTTGTTGCAACTGCTTTGTGCAAGGGTTCTGGACTTGTGGGTGGCCTTTATGCCCCAAGTCTAATGCTTGGTGCAGCTGTCGGTGCTGTATTTGGTGGTTCAGCAGCAGAAGTTATTAATTCTGCCATTCCTGGAAATGCAGCTGTTGCACAGCCACAAGCATATGCACTGGTTGGAATGGCTGCTACACTTGCTTCAGGAGCTGTTGGATTAGCCATATGGGTTCCTTCAGTGACAAGGCAAGGCAAGGAGATTGAAGCTTCTGAAAATCATGGGTCTTCTAGAGGCTATTCTTCCCTTTCTCCTTCTGAACGTAATATTGAAATTACAAGGAGATGGAATGATGCAAGCAATAATTTGGAACTCTCAACTATCGAAAATGTATCAGTCTGCCAAACAATTGATGAAGATATTCTTATGGAAGATATGAAGGTTTCTCAGGCAATGTCAAAGAACTTTCTGAAGATTTCATTATCTACAAGCTTGAAAGATGCAATGAAATATATGAATGAAAGTCAACAGAACTGTGCTTTAGTGGTGGATGATGGAGATTTTCTCGAGGGAATATTAACAAATGGTGACCTTAGACGGTATCTGTCTAAAGTATTGTTTATTGGGTGTGAAATAAAATCTCTACAGGTGGATGGAAGCGTTGTGTCCTCTGTTTGTACTAGGGTAATAAGCTATCGTGGGCGAGAGCGTGGGCTTCTAAGTTGCTACCCAGACACTGATTTGGCAACAGCAAAGGATCTGATGGAGGCCAAGGGAATAAATCAGTTACCAGTGGTAAAGCGCGGAGCTCCTAAGAAGCAGGGGAAACGAAGAGCTGTTGCTGTTCTCCACTATGACTTAATACGAAATTGTGTCAGGTGCACATTAGTTCTCCACTATGATTTGGATTTTTCATTCAGTGGGCTTCTGAAAGGTTGA 2283 44.72 MLGGECSDQNHLLRSTEDHVEDNDLEARNGDGDADGVQSRNYGSGSGRLAGGFMDLFKHLNRGSFSGRRHSFKRLDGNRINDSASPGGRGVDSHHLHSYNDDFHLRLHHAPTVNTAGEADSDDILDDTAPPEWVLLLIGCLVGLATGLCVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVAGGVIVGMMHGLVEILYEIKQSSPSQRPGFDLLAGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMGNNSERIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRSQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTRLVSWFHKSFDLIKDRFSLPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMLGAAVGAVFGGSAAEVINSAIPGNAAVAQPQAYALVGMAATLASGAVGLAIWVPSVTRQGKEIEASENHGSSRGYSSLSPSERNIEITRRWNDASNNLELSTIENVSVCQTIDEDILMEDMKVSQAMSKNFLKISLSTSLKDAMKYMNESQQNCALVVDDGDFLEGILTNGDLRRYLSKVLFIGCEIKSLQVDGSVVSSVCTRVISYRGRERGLLSCYPDTDLATAKDLMEAKGINQLPVVKRGAPKKQGKRRAVAVLHYDLIRNCVRCTLVLHYDLDFSFSGLLKG 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44630504 44636297 + Bma010277.1 Bma13g01145 93874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01145 760 CDD Voltage_gated_ClC 143 517 - -
Bma13g01145 760 SMART cbs_1 686 740 IPR000644 -
Bma13g01145 760 SMART cbs_1 603 651 IPR000644 -
Bma13g01145 760 Gene3D Clc chloride channel 123 524 - -
Bma13g01145 760 Gene3D - 582 737 IPR046342 -
Bma13g01145 760 PRINTS Chloride channel signature 286 305 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma13g01145 760 PRINTS Chloride channel signature 234 253 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma13g01145 760 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma13g01145 760 PRINTS Chloride channel signature 504 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma13g01145 760 MobiDBLite consensus disorder prediction 1 43 - -
Bma13g01145 760 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 4 742 - -
Bma13g01145 760 Pfam CBS domain 686 717 IPR000644 -
Bma13g01145 760 Pfam CBS domain 596 651 IPR000644 -
Bma13g01145 760 SUPERFAMILY CBS-domain pair 591 716 IPR046342 -
Bma13g01145 760 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 737 - -
Bma13g01145 760 Pfam Voltage gated chloride channel 230 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma13g01145 760 SUPERFAMILY Clc chloride channel 131 517 IPR014743 -
Bma13g01145 760 ProSiteProfiles CBS domain profile. 600 656 IPR000644 -
Bma13g01145 760 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 4 742 - -
Bma13g01145 760 MobiDBLite consensus disorder prediction 11 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01145 - - - csv:101212254 979.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00617 Bma13g01145 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00639 Bma-Chr10:8790012 Bma13g01145 Bma-Chr13:44630504 0 dispersed
Bma10g00640 Bma-Chr10:9086981 Bma13g01145 Bma-Chr13:44630504 2.48E-177 dispersed
Bma12g00894 Bma-Chr12:40263406 Bma13g01145 Bma-Chr13:44630504 1.76E-41 dispersed
Bma10g00616 Bma-Chr10:8454063 Bma13g01145 Bma-Chr13:44630504 3.55E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01145 Bma_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0