Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01146 ATGGCGGGAATTGAAGAAAATGTTGCTTTGAGTGGAGACTGGCTGGCTCCCAGTCCCAGCCCAAGAACATTCTTCTCTGCAATGCTTGGTGAAGATTTAGGCTCAAGGTCTGCTGCAATGGAGTCTGGTAGGAATAATCAAGAGCCATTCTTTCTCAGACCTCAAGAGGAGAGGTTTATGGAAAACTCCATGGAGGGGACTCCACCTTCTTCGGCCGGGTTATCGCCATTTTCAGACCAGAAAGTGAATTTACGAGCCGGCCTCTGCGAAAGAATAGCAGCCAGAGCTGGATTCAATGCTCCAAGACTAAACACAGAAAGTATTAGAACTTCTGATCTTTTGCTGGATTCCGATATCAAGTCTCCGTTCTGGACGATTCCTCCTGGTCTCAGTCCGACTACTCTGCTCGATTCTCCAGTTTTTCTTTCAAATTCACTGGTTCAGCCATCTCCGACCACTGGAAAACTTCCGTTTTTTACAAGCGATAACATTATGAGCTCCTCTTTAATGTCGGAGACGGGTAATAGAAGTAAAGATCATCTCTTTAGCAGTATCAATACCAGTGAATTCCCCTCCATAGCCTTTAAGCCCGGAGATGATATGAGACCGCCTTTTGTTCTTGGTGCAATGGCTCTGACCACTCATCCGCAGCCATCTTGTCCGGCCGAGGCTTCAGTACAATCGGAGAGTTCTCTTAAATCTCACAGTGCAGAACTGTCTAAACCTCCGTCGAATGGTCATGGAGATTTTTCGCCGGATCAAAGATTCTTCGATTCTATCGATGAAGGCAACAAACATTCTCCGCCGCTCGGTGAGCGTCAAGATGAGGATGGAGAGCAAAGAGCCACCGAAGAGTCGGTGGTTCCGAATAATTGTGGTGCCCCGTCGGACGATGGATATAACTGGAGAAAATACGGACAGAAACAGGTAAAAGGAAGTGAGTATCCGAGAAGTTATTATAAATGCACTCATCCAAACTGTCAGGTTAAGAAGAAGGTCGAACGCTCCTACGAGGGCCACATAACCGAGATCATCTATAAGGGCGCACATAACCATCCGAAGCCTTCCCCAAATCGGTGTAATCCGATGCAAAAAGACATGCATGAACAGCCACAGAGTTGCGAAGCTGATCTACTCTGGACAAGCCTGCAAAAAGGGACTTTGGCTGGAGCTTCTGATTGGAGGAATGACAACCCCGAGGTAACATCATCGGCTTCGGTGGGTCCTGAATACGTCAATCAATCCACCTCTTTACAGCCTCAGAACGGCTCCCATTTTGAGCAAGGCGATGCAGTTGACGTTTCCTCTACGTTTTCCAACGACGAAGACGAAGAAGATCGAGGAACTCATGGGAGCGTGTCGATAGGCCATGATGGTGAAGGAGATGAATCCGAATCGAAGAGAAGGAAAATTGAAGTTTATGCAAGTGAAATGAGTGGAGCTTCACGAGCCATCCGAGAGCCTCGAGTCGTAGTCCAGACAACCAGTGAAGTAGATATTCTCGATGATGGATATCGTTGGCGTAAATACGGACAGAAAGTCAAGCAACTGCTTTTATGCAGGAGTTACTACAAGTGCACGGCTGCAGGCTGCACGGTGAGGAAACACGTCGAGAGAGCTTCTCACGACCTTAAATCAGTAATAACGACATACGAAGGAAAGCATAATCATGACGTGCCGGCTGCTCGTAATAGCAGCCACATGAACGCCCCCACTTCCGGCTCGGTGGCAGCTCAAGCTCCATCGACATTGATTCAAAACCACGGTCACCGGCCGGAGCCATCTCAAGCTCACAACGGAATGGCAAGGTTCGACAGACAACCACAACTTGGTCCGTTTGGCCTGGCCGGAAGGCAGCAGGTAGGCCACCCTCTCCCTGCCCATGGTTTCAGTTACGCAATGAACCACCCTCCGACCATGCCAAACCTGACTTTGCCTGTGGTGGGACCCCCCGGCCAAGTCAAGCTTCCGGTTCTACCGTTTCATCCTTACATGGCTCAGCATGGGCAAGGGGAGGAAATGAGGTTTGGGATGCCGAAAGGAGAAATGAAGGTGGAGCCGATGACCGAGGCTGTGTATCAGCAGATAATGAGTAGGCTTCCACTCGGACCTCACGTTTAA 2121 49.22 MAGIEENVALSGDWLAPSPSPRTFFSAMLGEDLGSRSAAMESGRNNQEPFFLRPQEERFMENSMEGTPPSSAGLSPFSDQKVNLRAGLCERIAARAGFNAPRLNTESIRTSDLLLDSDIKSPFWTIPPGLSPTTLLDSPVFLSNSLVQPSPTTGKLPFFTSDNIMSSSLMSETGNRSKDHLFSSINTSEFPSIAFKPGDDMRPPFVLGAMALTTHPQPSCPAEASVQSESSLKSHSAELSKPPSNGHGDFSPDQRFFDSIDEGNKHSPPLGERQDEDGEQRATEESVVPNNCGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSYEGHITEIIYKGAHNHPKPSPNRCNPMQKDMHEQPQSCEADLLWTSLQKGTLAGASDWRNDNPEVTSSASVGPEYVNQSTSLQPQNGSHFEQGDAVDVSSTFSNDEDEEDRGTHGSVSIGHDGEGDESESKRRKIEVYASEMSGASRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVKQLLLCRSYYKCTAAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHMNAPTSGSVAAQAPSTLIQNHGHRPEPSQAHNGMARFDRQPQLGPFGLAGRQQVGHPLPAHGFSYAMNHPPTMPNLTLPVVGPPGQVKLPVLPFHPYMAQHGQGEEMRFGMPKGEMKVEPMTEAVYQQIMSRLPLGPHV 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 44637853 44640528 - Bma010278.1 Bma13g01146 93875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01146 706 MobiDBLite consensus disorder prediction 254 283 - -
Bma13g01146 706 SUPERFAMILY WRKY DNA-binding domain 493 560 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 SUPERFAMILY WRKY DNA-binding domain 295 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 MobiDBLite consensus disorder prediction 216 300 - -
Bma13g01146 706 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 99 642 - -
Bma13g01146 706 ProSiteProfiles WRKY domain profile. 297 355 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 642 IPR044810 GO:0003700
Bma13g01146 706 SMART WRKY_cls 296 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 SMART WRKY_cls 501 559 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 MobiDBLite consensus disorder prediction 218 241 - -
Bma13g01146 706 Gene3D WRKY domain 486 561 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 Gene3D WRKY domain 283 356 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 MobiDBLite consensus disorder prediction 389 436 - -
Bma13g01146 706 MobiDBLite consensus disorder prediction 389 468 - -
Bma13g01146 706 Pfam WRKY DNA -binding domain 502 557 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 Pfam WRKY DNA -binding domain 297 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 ProSiteProfiles WRKY domain profile. 496 560 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma13g01146 706 MobiDBLite consensus disorder prediction 441 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01146 K18835 WRKY2; WRKY transcription factor 2 - qsu:111999931 844.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00638 Bma13g01146 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00638 Bma-Chr10:8786790 Bma13g01146 Bma-Chr13:44637853 0 dispersed
Bma13g01146 Bma-Chr13:44637853 Bma14g01445 Bma-Chr14:27854253 2.95E-74 dispersed
Bma13g01146 Bma-Chr13:44637853 Bma10g00588 Bma-Chr10:7220605 1.19E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g794 . . . . Bpe09g00095 . Bma10g00638 Bma13g01146 . Cmo06g00665 . . . . . . . . . . . . . . Cla10g00374 . . . . . . . . Cone14ag1277 Cone15ag1303 . . . . . Blo10g00892 . Bda12g00992 . Bpe03g00733 . . . . . . Cma16g00995 . Car16g00952 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004749 1 2 1 2 2 1 1 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58272 PF03106 WRKY 2.80E-24 CL0274 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g01146 Bma_Chr13 FPKM 16.591291 17.524807 29.673023 28.36199 106.61039 96.554634 110.42524 12.931078 13.153653 13.432458