Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01184 TTGATCAATCGCTTCATGACGACGACCACGCCATTGCCGTCCATGAAGCTCTCCCCCGCGCCGAGCGAGCAGGATTTGGAGGCAGCTTCTGGCTCCGCCGGAGACTTTGTAGAAGAGGATGACGATTCCGTCGCTTCCGATCCTTTTGACATCCAGAGCACGAAGAAAGCTCCTCTTGTGGCTTTCAGGCGGTGGCGGTTTTTATTTCTTTTTTTTTTTTTTTTGCAGCAAGCTGCTCTGGTGCTAAATGCTTCTAGGAGGTTCCGGTATACGTTGGACTTGAAGAAGGAAGAAGAAAAAGAGCAAAGAAGACGGATGATAAGGGCCCACTCACAAGTCATACGGGCGGCATTGCTTTTCAAATTGGCCGGGGAGAGGCAAACTGGATCAGTCTCTTTGACAGAATCTCCAAATTACAATGGAGATTATGGGGTTCAATTGGAACAACTAGTATCGTTAACCAGAGATCATAATATTTCCGCTCTACAACAATATGGAGGGGCAAACTATTTCCTTCACCAGGTTAAAGGGCTAGCAAATGTGCTGAAAACTAATCTACAGAAAGGAATCACGGGAGATGATTTGGATCTATCAAAACGAAGAAATGCATTTGGATCAAATACATATCCTCGCAAAAAAGGGCGGAATTTTTGGAGGTTCCTTTGGGAAGCTTGGCAAGATTTGACTCTTATCATATTAATCATTGCTGCTGTTGCATCGTTAGTTTTGGGAATAAAAACGAAGGGTCTTGAGGAAGGATGGCTGGATGGAGGGAGCATAACATTTGCTGTTATTTTAGTAATAATGGTTACAGCTGTTAGCGATTATCGGCAATCACTCCAATTTCAAAATTTAAACGAGGAAAAGCAAAATATACGAATGGAGATCATGAGAGATGGTAGAATTGAAAAGGTGTCAATATTTGATATTGTTGTTGGTGATGTCATACCTCTCAGAATAGGTGATCAGGTCCCTGCTGATGGAATTTTGGTTAGCGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGAGAAAGCAAGATTGTGAGTTTATTATACTGCTATGGTTCAATTTTTGTAATTAGATTCACTAACAATCGTTCTCTTCAGGTCCATAAAGACCATAAAACCCCTTTTTTGATGTCTGGGTGTAAAGTAGCAGATGGAGTTGGTAGTATGCTGGTTACTGGTGTTGGAATCAACACTGAATGGGGGTTACTGATGGCAAGTATTTCAGAGGATACTGGCGAGGAGACCCCCCTGCAGGTACGCTTGAATGGAGTTGCAACTTTCATAGGCATTGTTGGGCTTGCAGTTGCTTTGGCTGTGCTGTCTGTCCTTTTGGGCAGGTACTTGACTGGACATACCACAAATTCCGATGGGACTGTACAGTTTAAGATGGGCAAGACTGGCCTCGGCGATGCAGTTGATGGAATCATTAAAATTGTCACCGTTGCTGTAACCATTGTGGTTGTTGCGGTTCCCGAAGGACTCCCCTTGGCTGTTACTCTGACATTAGCTTATTCCATGCGCAAAATGATGGCAGATAAAGCCTTGGTTCGTCGGCTGTCTGCCTGTGAAACCATGGGTTCTGCAACAACTATTTGTAGCGATAAGACAGGAACATTGACGCTGAATCAGATGACTGTGATTGAAGCTTATGTGGGAAGAGAGAAGATCAATCCAGTTGATGATTCGTCACAGTTGCATCCAGCCGTATTGTCTCTCCTAAGTGAAGGCATTGCACAAAATAGCACAGGGAACGTTTTTGTGCCTAAGAGTGGTGAAGAAGTCGAGGTTTCTGGTTCTCCTACTGAAAAAGCTTTACTGTCTTGGGCCGTCAAGCTTGGAATGAAGTTTGATGTTGTCAGGTCAGAATCCAAAGTTCTCCATGTTTTTCCTTTCAACTCAGAGAAAAAGAGAGGAGGTGTTGCAGTAAAGCAGGTTGACTCAAAAGTTCATATACACTGGAAGGGAGCGGCGGAGGTAGTTTTAGCTTCCTGTACAGAGTATCTTGACTTGAATGGTGATTTACAGTCAATTGGTGAAGACAAGGAATTTTTTAAGGCGGCTATTGATGATATGGCTGCAAGATGTTTGCGATGTATTGCCATCGCATACAAAGTTCCAGAGTTAGATCAAGTTCCAACTGATGAAGAGCATCTAGCGCAATGGGCTCTACCTGAAGACGATCTTGTCTTGCTCGCTATAGTTGGTATCAAGGATCCTTGTCGCCCTGGTGTGAAAACTGCAGTGAAAATATGCTCAGATGCTGGTGTAAAGGTGCGCATGGTTACAGGAGATAATCTGCAAACTGCAAAAGCTATATCTTTCGAGTGTGGGATACTTGATTCAAGTGAAGATGTGACTGAACCTCGTATTATTGAAGGAAAAGTATTCCGGGCACTTTCTGAGAAAGAAAGAGAACAAATTGCCGATAAGATTACGGTGATGGCAAGATCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTGAGAAAGAGAGGAGAAGTTGTTGCTGTTACGGGAGACGGGACTAATGATGCTCCTGCACTCCATGAGGCAGATATTGGACTTTCCATGGGTATTCAAGGAACAGAAGTTGCAAAAGAAAGTTCTGATATTGTTATCTTGGACGACAACTTTGCTTCAGTTGTGAAGGTTGTTCGCTGGGGGCGTTCTGTGTACGCAAATATTCAGAAGTTCATCCAATTCCAGCTAACAGTAAATGTTGCAGCTCTTGTAATTAATGTTGTTGCAGCAATATCTTCCGGCGATGTTCCTTTAAATACAGTGCAGCTTTTGTGGGTTAACCTAATCATGGATACACTCGGAGCACTAGCTTTGGCAACTGAACCACCAACTGACCACCTCATGCAAAGATCTCCTGTCGGCCGAAGGGAGCCTCTTGTAACAAACATTATGTGGAGGAATCTGATCATACAGGCTTTATATCAAGTTGGTGTGCTCCTAGTTCTCAACTTCTGGGGTACCAATATTCTTGATCTAAAAGATAGCACAAGGGCGCATGTTGTTGAAGTGAAGAATACAGTCATATTCAATGCTTTCGTCCTCTGCCAAATATTCAATGAGGTCAATGCTCGAAAGCCGGATGAAATGAACATATTCAGTGGAATAACTAAAAACAATCTCTTCATGGGAATTGTTGGAGGGACATTTCTTCTTCAGATCATCATCATCCAATTTCTTGGTAAATTTACAACGACAGTAAGACTCAACTTGGAGCAATGGCTCATGTGCCTTGGAATCGGTCTTGTTGGCTGGCCTCTGGCCGCAATTGGAAAGCTCATCCCAGTTCCGGCGACCCCAGTTGCCAAATATTTCAGCAAGTGCAGTCTAATCCACCGACGCAGAAATGCTTGA 3390 43.48 LINRFMTTTTPLPSMKLSPAPSEQDLEAASGSAGDFVEEDDDSVASDPFDIQSTKKAPLVAFRRWRFLFLFFFFLQQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHSQVIRAALLFKLAGERQTGSVSLTESPNYNGDYGVQLEQLVSLTRDHNISALQQYGGANYFLHQVKGLANVLKTNLQKGITGDDLDLSKRRNAFGSNTYPRKKGRNFWRFLWEAWQDLTLIILIIAAVASLVLGIKTKGLEEGWLDGGSITFAVILVIMVTAVSDYRQSLQFQNLNEEKQNIRMEIMRDGRIEKVSIFDIVVGDVIPLRIGDQVPADGILVSGHSLAIDESSMTGESKIVSLLYCYGSIFVIRFTNNRSLQVHKDHKTPFLMSGCKVADGVGSMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVALAVLSVLLGRYLTGHTTNSDGTVQFKMGKTGLGDAVDGIIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVIEAYVGREKINPVDDSSQLHPAVLSLLSEGIAQNSTGNVFVPKSGEEVEVSGSPTEKALLSWAVKLGMKFDVVRSESKVLHVFPFNSEKKRGGVAVKQVDSKVHIHWKGAAEVVLASCTEYLDLNGDLQSIGEDKEFFKAAIDDMAARCLRCIAIAYKVPELDQVPTDEEHLAQWALPEDDLVLLAIVGIKDPCRPGVKTAVKICSDAGVKVRMVTGDNLQTAKAISFECGILDSSEDVTEPRIIEGKVFRALSEKEREQIADKITVMARSSPNDKLLLVQALRKRGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLVTNIMWRNLIIQALYQVGVLLVLNFWGTNILDLKDSTRAHVVEVKNTVIFNAFVLCQIFNEVNARKPDEMNIFSGITKNNLFMGIVGGTFLLQIIIIQFLGKFTTTVRLNLEQWLMCLGIGLVGWPLAAIGKLIPVPATPVAKYFSKCSLIHRRRNA 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45120643 45130730 + Bma010323.1 Bma13g01184 93913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01184 1129 Pfam E1-E2 ATPase 294 515 - -
Bma13g01184 1129 MobiDBLite consensus disorder prediction 1 48 - -
Bma13g01184 1129 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 99 IPR024750 GO:0005516
Bma13g01184 1129 SUPERFAMILY HAD-like 535 949 IPR036412 -
Bma13g01184 1129 Gene3D - 223 1097 - -
Bma13g01184 1129 PRINTS P-type cation-transporting ATPase superfamily signature 537 551 - -
Bma13g01184 1129 PRINTS P-type cation-transporting ATPase superfamily signature 737 748 - -
Bma13g01184 1129 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Bma13g01184 1129 PRINTS P-type cation-transporting ATPase superfamily signature 868 880 - -
Bma13g01184 1129 PRINTS P-type cation-transporting ATPase superfamily signature 759 769 - -
Bma13g01184 1129 PRINTS P-type cation-transporting ATPase superfamily signature 844 863 - -
Bma13g01184 1129 PANTHER CATION TRANSPORTING ATPASE 35 1122 - -
Bma13g01184 1129 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 477 561 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01184 1129 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 810 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01184 1129 Gene3D - 534 889 IPR023214 -
Bma13g01184 1129 Gene3D - 547 744 IPR023299 GO:0000166
Bma13g01184 1129 SFLD p-type atpase 519 896 IPR044492 -
Bma13g01184 1129 Pfam Cation transporting ATPase, C-terminus 929 1106 IPR006068 -
Bma13g01184 1129 MobiDBLite consensus disorder prediction 1 17 - -
Bma13g01184 1129 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 544 741 IPR023299 GO:0000166
Bma13g01184 1129 Pfam Cation transporter/ATPase, N-terminus 174 240 IPR004014 -
Bma13g01184 1129 Gene3D - 60 122 - -
Bma13g01184 1129 SUPERFAMILY Calcium ATPase, transmembrane domain M 170 1108 IPR023298 -
Bma13g01184 1129 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 377 1108 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bma13g01184 1129 Gene3D - 197 413 - -
Bma13g01184 1129 ProSitePatterns E1-E2 ATPases phosphorylation site. 539 545 IPR018303 -
Bma13g01184 1129 SUPERFAMILY Calcium ATPase, transduction domain A 293 410 IPR008250 -
Bma13g01184 1129 SFLD Haloacid Dehalogenase 519 896 - -
Bma13g01184 1129 SMART Cation_ATPase_N_a_2 171 245 IPR004014 -
Bma13g01184 1129 CDD P-type_ATPase_Ca_PMCA-like 197 977 - -
Bma13g01184 1129 Pfam haloacid dehalogenase-like hydrolase 534 858 - -
Bma13g01184 1129 PANTHER CALCIUM-TRANSPORTING ATPASE 35 1122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02247 Bma-Chr1:79646522 Bma13g01184 Bma-Chr13:45120643 0 dispersed
Bma06g00346 Bma-Chr6:7696879 Bma13g01184 Bma-Chr13:45120643 0 dispersed
Bma06g01032 Bma-Chr6:47128388 Bma13g01184 Bma-Chr13:45120643 0 dispersed
Bma07g00120 Bma-Chr7:1932200 Bma13g01184 Bma-Chr13:45120643 3.65E-101 dispersed
Bma10g00217 Bma-Chr10:1981509 Bma13g01184 Bma-Chr13:45120643 8.19E-15 dispersed
Bma13g01184 Bma-Chr13:45120643 Bma15g00618 Bma-Chr15:7843658 0 dispersed
Bma13g01184 Bma-Chr13:45120643 Bma04g00144 Bma-Chr4:1235599 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01184 K01537 - mnt:21385058 1574.68