Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01188 GAACGGCTGCCACTGGAAGAAGTTTTCGAACAACTTAGAACATCACCTCAGGGACTTACCTCCGAAGAAGCCAAAGCTCGAGAATTGATCTTCGGCCAGAACCGTCTCGAAGAAAAGCCGGAAAACAAATTTTTCAAATTTTTAGGGTTCATGTGGAATCCACTGTCATGGGTTATGGAAGCTGCAGCAATTATGGCCATTGCTCTGGCTAATGGAGGAGGTCAGCCTCCAGACTGGCAAGATTTTGTGGGTATTCTTTGTCTGCTCGTAATCAACTCAACAATTAGTTTTATTGAAGAAAACAATGCCGGAAATGCTGCTGCAGCCCTCATGGCCCGTTTAGCTCCAAAAACACGAGTTCTTAGAGATGGGCAGTGGCAAGAGCAAGATGCTTCTGTTTTAGTACCTGGAGATATAGTTACCATAAAACTAGGGGATATTATCCCCGCTGATTCTCGATTGCTCGAAGGAGACCCCCTTAAGATTGATCAGGCATCGGCACTTACCGGAGAATCCTTACCGGTCACCAAGAGAACAGGTGATGAAGTTTATTCCGGTTCTACCTGCAAACAAGGAGAGATTGAGGCAGTTGTTATAGCAACAGGCGTTCACTCATTTTTCGGAAAGGCTGCTCATCTAGTTGACTCCACCGAAGTTGTCGGACATTTCCAGAAGGTGCTTACCGCCATTGGAAATTTCTGCATTTGCTCCATAGCTGTGGGAATGATTCTTGAAATCATTGTCATGTTCCCGGTACAGCACCGTAGCTACAGAGATGGAATCAACAATCTCCTTGTTCTCTTGATCGGAGGAATTCCCATTGCTATGCCGACAGTCTTGTCCGTGACTCTTGCAATTGGTTCTCACCGACTTTCTCAACAGGGTGCCATTACAAAGAGGATGACTGCAATTGAAGAAATGGCCGGAATGGATGTCCTGTGCAGTGACAAAACAGGAACACTTACCCTGAACCGCCTCTCTGTCGACAAAAATCTTGTTGAGGTTTTTAACAAAGATATAGACAAAGACACGGTGGTCTTGTTTGCAGCCAGAGCATCAAGAATGGAGAACCAGGATGCTATCGATGCAGCTATTGTCAACATGCTTGCTGATCCAAAGGAGGCTCGAGCAAACATCAAGGAAGTGCATTTTCTGCCTTTCAATCCAGTTGACAAACGTACTGCTATTACCTATGTTGATTCTGATGGTAACTGGCATCGTACCACCAAAGGCGCTCCCGAGCAGATTCTAAATCTCTGCAAAGAGAAAAATGAGATTGCTGGAAAAGTGCACTCCATCATAGACAAATTCGCCGAAAGAGGACTGCGATCGCTTGGAGTTGCATATCAGACGGTTCCTGAAAAAAGCAAGGAAAGCGCGGGAAGCGAGTGGACATTTTGTGGGTTGTTGCCGTTGTTTGATCCTCCAAGACACGATAGTGGAGAGACCATCCGTCGGGCACTTAACCTTGGAGTTTGTGTGAAGATGATTACTGGTGATCAGTTGGCCATTGCAAAGGAGACAGGCAGACGCCTTGGAATGGGAACAAATATGTACCCATCTTCTTCATTGCTAGGTCGCCAAAAAGATGAACATGAAGCTCTTCCAGTGGAGGAGCTCATCGAGAAAGCAGACGGCTTTGCTGGAGTATTTCCCGGTACTGAAATTCAATGCTCTGCCCTTTCATTGATTTCGCTATATGTTCAACTTCCAGAACACAAATATGAAATCGTTAAGATTTTACAAGAAAAGAAGCATGTGGTTGGAATGACGGGGGATGGTGTGAATGATGCACCTGCTTTAAAGAAAGCAGATATCGGTATAGCAGTGGCAGATGCCACAGATGCTGCAAGAAGTGCTTCAGATATAGTCTTAACTGAGCCTGGTCTGAGTGTCATCATCAGTGCTGTCTTAACTAGCAGAGCAATTTTTCAAAGAATGAAGAACTATACAATATATGCCGTCTCCATTACCATCCGTATTGTGCTTGGTTTTGTGCTTCTGGCTTTGATATGGGAATTCGATTTCCCACCTTTCATGGTTCTGATCATTGCAATATTGAATGATGGAACAATCATGACTATTTCTAAAGATAGAGTCAAACCATCTCCGGGCCCAGATAGTTGGAGGCTCCCTGTAATTTTTGCTACAGGGATCGTAATAGGCACATATCTTGCTCTAGTTACTGTGCTATTCTTCTGGTTGGTAGTGGGTACAGACTTCTTTGAGACTCGATTTCATGTCGATTCTTTGACTAACAACTATGAAAAAGTAGCAGCTGCTGTATATCTGCAAGTGAGCATCATCAGTCAGGCTCTCATATTCGTCACTCGTAGCCATGGATGGTCATATGCGGAGCGGCCTGGAGTTCTCTTGATGTGTGCATTCGTGGTAGCTCAGCTGGTGGCTACCTTAATTGCAGTCTATGCAAATATAAGTTTTGCTTACATCAATGGCATCGGATGGAGATGGGCTGGTGTCATCTGGCTATATAGCTTGATCTTCTACATTCCTCTCGATGTTATTAAGTTCATAATTCGGTATACCGTCAGTGGAGAAGCTTGGAATCTGTTATTTGACAGAAAGACATTGTTTACATCGAAGAAAGACTACGGCAGTGAAGACAGAGCAGCTAAATGGGTGCAGTCTCAAAGAAGCCTCCACGGATTAGGGTCATCTACAGAATTGGAGTTTGACGGTAGGCGATCGACTTTGATAGCAGAGCAGGCGAAGAGGCGAGCCGAAATAGCTAGGCTAGGAGAGTTGCACACTCTGAGAGGACATGTAGAATCTGTGGTGAGGCTTAAAAACTTGGACGTCGACATAATCCAAACTGCTCATACAGTCTAA 2850 44.74 ERLPLEEVFEQLRTSPQGLTSEEAKARELIFGQNRLEEKPENKFFKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGILCLLVINSTISFIEENNAGNAAAALMARLAPKTRVLRDGQWQEQDASVLVPGDIVTIKLGDIIPADSRLLEGDPLKIDQASALTGESLPVTKRTGDEVYSGSTCKQGEIEAVVIATGVHSFFGKAAHLVDSTEVVGHFQKVLTAIGNFCICSIAVGMILEIIVMFPVQHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLSVDKNLVEVFNKDIDKDTVVLFAARASRMENQDAIDAAIVNMLADPKEARANIKEVHFLPFNPVDKRTAITYVDSDGNWHRTTKGAPEQILNLCKEKNEIAGKVHSIIDKFAERGLRSLGVAYQTVPEKSKESAGSEWTFCGLLPLFDPPRHDSGETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRQKDEHEALPVEELIEKADGFAGVFPGTEIQCSALSLISLYVQLPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPGPDSWRLPVIFATGIVIGTYLALVTVLFFWLVVGTDFFETRFHVDSLTNNYEKVAAAVYLQVSIISQALIFVTRSHGWSYAERPGVLLMCAFVVAQLVATLIAVYANISFAYINGIGWRWAGVIWLYSLIFYIPLDVIKFIIRYTVSGEAWNLLFDRKTLFTSKKDYGSEDRAAKWVQSQRSLHGLGSSTELEFDGRRSTLIAEQAKRRAEIARLGELHTLRGHVESVVRLKNLDVDIIQTAHTV 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45155670 45161190 + Bma010327.1 Bma13g01188 93917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01188 949 SUPERFAMILY Calcium ATPase, transduction domain A 116 214 IPR008250 -
Bma13g01188 949 PRINTS P-type cation-transporting ATPase superfamily signature 468 479 - -
Bma13g01188 949 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Bma13g01188 949 PRINTS P-type cation-transporting ATPase superfamily signature 490 500 - -
Bma13g01188 949 PRINTS P-type cation-transporting ATPase superfamily signature 164 178 - -
Bma13g01188 949 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Bma13g01188 949 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Bma13g01188 949 SFLD Haloacid Dehalogenase 296 642 - -
Bma13g01188 949 Gene3D - 326 473 IPR023299 GO:0000166
Bma13g01188 949 PANTHER ATPASE 10, PLASMA MEMBRANE-TYPE 1 929 - -
Bma13g01188 949 Gene3D - 78 310 - -
Bma13g01188 949 Gene3D - 570 628 IPR023214 -
Bma13g01188 949 SMART Cation_ATPase_N_a_2 1 71 IPR004014 -
Bma13g01188 949 Pfam Cation transporter/ATPase, N-terminus 3 65 IPR004014 -
Bma13g01188 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 849 IPR023298 -
Bma13g01188 949 Gene3D - 629 818 - -
Bma13g01188 949 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 571 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01188 949 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 85 521 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01188 949 Pfam E1-E2 ATPase 114 293 - -
Bma13g01188 949 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 18 553 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bma13g01188 949 PANTHER CALCIUM-TRANSPORTING ATPASE 1 929 - -
Bma13g01188 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 316 322 IPR018303 -
Bma13g01188 949 SUPERFAMILY HAD-like 310 638 IPR036412 -
Bma13g01188 949 PRINTS H+-transporting ATPase (proton pump) signature 544 560 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01188 949 PRINTS H+-transporting ATPase (proton pump) signature 430 448 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01188 949 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g01188 949 Pfam haloacid dehalogenase-like hydrolase 310 605 - -
Bma13g01188 949 CDD P-type_ATPase_H 18 844 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bma13g01188 949 Gene3D - 902 949 - -
Bma13g01188 949 Gene3D - 311 552 IPR023214 -
Bma13g01188 949 Gene3D - 116 201 - -
Bma13g01188 949 SFLD p-type atpase 296 642 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01014 Bma-Chr6:46708766 Bma13g01188 Bma-Chr13:45155670 0 dispersed
Bma07g00693 Bma-Chr7:14786593 Bma13g01188 Bma-Chr13:45155670 0 dispersed
Bma10g00662 Bma-Chr10:9527553 Bma13g01188 Bma-Chr13:45155670 0 wgd
Bma10g00701 Bma-Chr10:10603985 Bma13g01188 Bma-Chr13:45155670 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01188 K01535 - jre:108983058 1585.08