Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01189 ATGGTGAAGCACTGGAGCTGGAGCGCGCTGTTTTTGCTCATTAACGTCTGCATTCTGGAATGGAGGCCTAGTCTCGTATATGGAGCCACAGATCCAGGAGATGCTGCTGCTCTAAGGGTCTTGTACACCTCTTTGAATTCTCCACCTCAGTTAACCCAGTGGAGTGCAAATGGTGATGATCCGTGCGGGCAGTCATGGAAGGGTATTTCTTGCTCAGGCTCGCGGGTCACCGAAATTGTACTGTCTGGCCTGGGACTTTCTGGATCATTGGGATACCAGCTCACTAGTTTAACATCCACGTCCAAACTAGATGTGAGCAACAACAATCTTGCTGGAGAGATAGCTTATCAGCTACCTCCAAACTTAATCAGATTAGATCTTGGTCGTAATAATTTTAATGGCGGCATTCCTTACTCCATCTCTCAAATGACTACCCTACAGTACCTAAATATCAGCCATAACCAGCTTCAGAATCAACTGATCGATATGTTTGACAGCCTTTCATCGCTTGTCGCCCTGGATATTTCATATAATTCTTTGCCAGGTGCCCTCCCCAGGAGTTTTAGCTCCCTCTCTAGCATGAACACTATGTACTTGCAAAACAACCAATTCACTGGCACCATTGATGTCCTCGCAAATCTTCCGCTTCAAAATTTGAATATTGAGAATAACCGGTTTACTGGTTGGATTCCAGAGCAGTTGAAAAACATTAATTTGCAGTCGAATGGTAATTCTTGGAGTTCAGGACCTGCCCCCCCTCCTCCACCCGGTACACCACCAGCGCCCAAAAACAACCAAAATCGTGGCTCCAATGGAAATAATAGCCCCTCGGGTGGAGGTGGAGGTGGTGGTAAGTCAGGAATAGGAGGTGGTGCCATTGCTGGAATAGTTATATCTATTCTTGTCGTTGGATCGGTTATTGCCTTTTTCCTTGTAAAGAAAAGATCCAGGAAGTCATCCTCGGACATAGAAAAGCTCGATGACCGGTCTTTTGCGCCTCTTGTTTCGAATGAAGTTCAAGAAATGAAGTCAATAGAAACTCCCACCAAATTCAACGCAAAGACATTTGATCCGTCGATCGGATTAAATCTTAAACCCCCACCGGTTGACCATCACAAATCATTTGATGAGGATGATTTCGCCAAGAAAGCTCTAGTCAAGAAGAAGGCCAATACGCCTCCTTCAAATGTAAAATCATTTTCAATAGCTGATTTACAGATGGCTACCGGCAGCTTCAATGTCGAAAATCTTCTCGGCGAAGGGTCGTTCGGGCGTGTTTATCGAGCTCAGTTTGACGATGGAAAGGTCCTTGCTGTGAAAAATATAGATTCATCTGCAATATCCCGTGACTTTTTTGAAGATTTCACAGAAATCGTATCGAATATCTCCCAATTGCATCACCCAAATGTTACCGAGCTGATGGGTTACTGCTCGGAGCATGGGCAGCATCTCCTAGTTTATGAATTCCATAAAAATGGCTCCCTTCATGAATTCTTACATTTATCTGACGAATACACTAAGCCACTGACGTGGAACTCCCGTGTCAAAATTGCATTAGGAATCGCCCGAGCTTTAGAGTACTTGCATGAAGTTTGTTCACCATCAATTGTTCATAAAAATATAAAATCAGCAAATATATTACTGGACGTGGAGCTCAATCCTCACCTATCCGAATGTGGGCTGGCCAGTTTCATGCCGGATCAGGCATTGGATAACAATACAGGGTCTGGATACAGTGCCCCAGAAGTCACCATGTCTGGTCAATACACTCTGAAGAGCGACGTCTACAGTTTCGGAGTTGTCATGTTAGAGGTTCTTAGTGGCCGGAAACCATTTGACAGTACAAGACCGATGGCCGAACAATCCCTGGTTCGGTGGGCCACTCCTCGGTTGCATGACATTGATGCTTTATCGAAAATGGTCGATCCAGGACTCGAAGGGCTCTACCCTGCAAAATCTCTCTCTCGATTTGCAGATGTGATAGCTCTTTGCGTACAGCCTGAGCCGGAGTTTAGACCCCCTATGTCTGAAGTGGTGCAAGCGCTGGTTGTACTCGTGCAAAGGGCTAACATGAGCAAGAGAACAGTGAGAAACAATGACGGATCGCCCCCACGCTCTGATGCTCCCGACGCACTGTAA 2139 45.72 MVKHWSWSALFLLINVCILEWRPSLVYGATDPGDAAALRVLYTSLNSPPQLTQWSANGDDPCGQSWKGISCSGSRVTEIVLSGLGLSGSLGYQLTSLTSTSKLDVSNNNLAGEIAYQLPPNLIRLDLGRNNFNGGIPYSISQMTTLQYLNISHNQLQNQLIDMFDSLSSLVALDISYNSLPGALPRSFSSLSSMNTMYLQNNQFTGTIDVLANLPLQNLNIENNRFTGWIPEQLKNINLQSNGNSWSSGPAPPPPPGTPPAPKNNQNRGSNGNNSPSGGGGGGGKSGIGGGAIAGIVISILVVGSVIAFFLVKKRSRKSSSDIEKLDDRSFAPLVSNEVQEMKSIETPTKFNAKTFDPSIGLNLKPPPVDHHKSFDEDDFAKKALVKKKANTPPSNVKSFSIADLQMATGSFNVENLLGEGSFGRVYRAQFDDGKVLAVKNIDSSAISRDFFEDFTEIVSNISQLHHPNVTELMGYCSEHGQHLLVYEFHKNGSLHEFLHLSDEYTKPLTWNSRVKIALGIARALEYLHEVCSPSIVHKNIKSANILLDVELNPHLSECGLASFMPDQALDNNTGSGYSAPEVTMSGQYTLKSDVYSFGVVMLEVLSGRKPFDSTRPMAEQSLVRWATPRLHDIDALSKMVDPGLEGLYPAKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQRANMSKRTVRNNDGSPPRSDAPDAL 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45177803 45183453 + Bma010329.1 Bma13g01189 93918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01189 712 Pfam Protein tyrosine and serine/threonine kinase 414 682 IPR001245 GO:0004672|GO:0006468
Bma13g01189 712 Pfam Leucine Rich Repeat 170 191 IPR001611 GO:0005515
Bma13g01189 712 Gene3D Transferase(Phosphotransferase) domain 1 491 702 - -
Bma13g01189 712 MobiDBLite consensus disorder prediction 248 262 - -
Bma13g01189 712 SUPERFAMILY L domain-like 31 238 - -
Bma13g01189 712 MobiDBLite consensus disorder prediction 240 283 - -
Bma13g01189 712 ProSiteProfiles Protein kinase domain profile. 412 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g01189 712 MobiDBLite consensus disorder prediction 263 280 - -
Bma13g01189 712 PANTHER OS01G0253100 PROTEIN 23 708 IPR045271 GO:0004714|GO:0006468
Bma13g01189 712 Gene3D Ribonuclease Inhibitor 31 255 IPR032675 -
Bma13g01189 712 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 23 708 - -
Bma13g01189 712 SUPERFAMILY Protein kinase-like (PK-like) 393 683 IPR011009 -
Bma13g01189 712 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Bma13g01189 712 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
Bma13g01189 712 Gene3D Phosphorylase Kinase; domain 1 375 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01189 - - - vvi:100249831 976.852
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma09g01001 Bma13g01189 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00749 Bma-Chr12:34452225 Bma13g01189 Bma-Chr13:45177803 5.62E-37 dispersed
Bma13g01189 Bma-Chr13:45177803 Bma10g00543 Bma-Chr10:6598170 6.95E-79 dispersed
Bma10g00660 Bma-Chr10:9492498 Bma13g01189 Bma-Chr13:45177803 0 transposed
Bma13g01172 Bma-Chr13:45031311 Bma13g01189 Bma-Chr13:45177803 8.92E-144 transposed
Bma13g01189 Bma-Chr13:45177803 Bma09g01001 Bma-Chr9:49512925 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00749 BCT 24 750 Strubbelig Receptor Gene Family AT4G03390 58.0 4.9e-191 664.8
Bma02g01363 BCT 24 629 Strubbelig Receptor Gene Family AT4G03390 53.9 3.6e-162 568.9
Bma09g01001 CCT 285 578 Strubbelig Receptor Gene Family AT4G03390 55.2 3.9e-87 319.7
Bma13g01172 . 154 444 Strubbelig Receptor Gene Family AT4G03390 54.7 8.6e-87 318.5
Bma13g01172 . 1 459 Strubbelig Receptor Gene Family AT1G78980 61.0 5.6e-154 541.6
Bma10g00660 . 26 688 Strubbelig Receptor Gene Family AT1G78980 51.4 2.4e-128 456.4
Bma09g01001 CCT 288 593 Strubbelig Receptor Gene Family AT1G78980 61.2 3.2e-101 366.3
Bma13g01172 . 1 442 Strubbelig Receptor Gene Family AT3G13065 51.8 1.1e-117 421.0
Bma09g01001 CCT 285 576 Strubbelig Receptor Gene Family AT3G13065 60.1 3.6e-97 352.8
Bma13g01189 CCT 387 682 Strubbelig Receptor Gene Family AT1G11130 51.5 1.8e-83 307.4
Bma09g01001 CCT 288 576 Strubbelig Receptor Gene Family AT1G11130 53.8 5.1e-83 305.8
Bma10g00660 . 397 679 Strubbelig Receptor Gene Family AT1G11130 51.9 2.4e-80 297.0
Bma12g00749 BCT 24 750 Strubbelig Receptor Gene Family AT4G03390 58.0 4.9e-191 664.8
Bma02g01363 BCT 24 629 Strubbelig Receptor Gene Family AT4G03390 53.9 3.6e-162 568.9
Bma09g01001 CCT 285 578 Strubbelig Receptor Gene Family AT4G03390 55.2 3.9e-87 319.7
Bma13g01172 . 154 444 Strubbelig Receptor Gene Family AT4G03390 54.7 8.6e-87 318.5
Bma13g01172 . 1 442 Strubbelig Receptor Gene Family AT3G13065 51.8 1.1e-117 421.0
Bma09g01001 CCT 285 576 Strubbelig Receptor Gene Family AT3G13065 60.1 3.6e-97 352.8
Bma13g01172 . 1 459 Strubbelig Receptor Gene Family AT1G78980 61.0 5.6e-154 541.6
Bma10g00660 . 26 688 Strubbelig Receptor Gene Family AT1G78980 51.4 2.4e-128 456.4
Bma09g01001 CCT 288 593 Strubbelig Receptor Gene Family AT1G78980 61.2 3.2e-101 366.3
Bma13g01189 CCT 1 696 Strubbelig Receptor Gene Family AT1G53730 60.5 3.7e-201 698.4
Bma10g00660 . 15 693 Strubbelig Receptor Gene Family AT1G53730 63.4 5.2e-195 677.9
Bma09g01001 CCT 1 587 Strubbelig Receptor Gene Family AT1G53730 59.0 8.1e-164 574.3
Bma13g01172 . 3 450 Strubbelig Receptor Gene Family AT1G53730 50.5 1.1e-117 421.0
Bma13g01189 CCT 13 702 Strubbelig Receptor Gene Family AT3G14350 60.4 2.5e-191 665.6
Bma10g00660 . 15 699 Strubbelig Receptor Gene Family AT3G14350 53.1 3.5e-164 575.5
Bma09g01001 CCT 1 590 Strubbelig Receptor Gene Family AT3G14350 63.2 1.0e-163 573.9
Bma13g01172 . 101 461 Strubbelig Receptor Gene Family AT3G14350 52.0 5.5e-93 339.0
Bma13g01189 CCT 394 701 Strubbelig Receptor Gene Family AT4G22130 64.4 1.3e-113 407.1
Bma10g00660 . 376 698 Strubbelig Receptor Gene Family AT4G22130 62.1 5.1e-113 405.2
Bma13g01172 . 155 457 Strubbelig Receptor Gene Family AT4G22130 58.7 1.2e-103 374.0
Bma12g00749 BCT 437 742 Strubbelig Receptor Gene Family AT4G22130 58.3 1.4e-99 360.5
Bma02g01363 BCT 369 625 Strubbelig Receptor Gene Family AT4G22130 59.3 2.2e-84 310.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66862 PF07714 PK_Tyr_Ser-Thr 2.10E-42 CL0016 Bma PK