Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01193 CTTTCTTCGTTTAAAACGATGATCGACGTCAAGCCAGTGATGGCCGGAGTGCCAGATTCCGGCAGTCCACCATATGTATCGGAGCTAAACAAGAGGAAGCTCTTATTCTGGGCTCTCTCTGCTGTTCTTCTGATTTCTGATTTCATCGGAGTTGCAGTCGGAGTTGAGTCGAGAGAAAACTCCGACGAGGTCGAGACTTTTCATCCTTCCCATTCTATTATCAAAACCTCTTGCAGCTCCACTTTATACCCCGACTTATGCGTCTCCGCCATTACCTCTGTTGACGGAGCTAGCAAAAAAGTCTCCAGCCCGAAGGACGTCATCGAGCTGTCGTTAAATATCACGATCGAAGCAGTGAAGAAAAATTATTTAGCCATTAAAAAGCTTAGGAGCAGAGAAGGATTGACCAAGCGAGAGAAGGTTGCGGTCAATGATTGCTTGGATAACATGGAAGACACCCTCTACGAGCTCGATAAGGCTGTAGAGGATCTCCATTTGTACCCAACTAAGAAATCTCTAGCCCTGCACGCCGACGACCTTAAGACTTTGCTCAGTTCCACAATCACCAACCAGGAATCTTGCTTAGACGGGTTCTCTTACAGCGATGCCGACAGAAAGGTAAGGAAGGTGCTGCTCAAGGCAGAGATCCATATCGAGAAAATGTGCAGTAATGTTTTGGCGATGATTAAGAACATGACCGACACTGATATAATAAACGAGAGTAAATTGATGGGAAGGAAGCAGTTGACGGAGGAGGTGGGTCACGACGACTTAAAGTGGCCGGATTGGCTGTCGGGTTCCGACAGACGGCTGTTGCAGTCGACTTCAGTGACACCGAATGTGGTGGTGGCAGCCGACGGCAGTGGGGACTACCGGACAGTCTCGGAAGCAGTGGCAGCCGCACCGTCAAGGACGGCGGTCGGCGAAAATTTTCTGGCCCGGGACATTACCTTCCGAAACACCGCCGGTCCGTCCAAGCACCAGGCCGTGGCTCTACGTGTCGGGTCCGATCTCTCCGCCTTTTACCGATGTGAAATGGATGCCTATCAAGATACCCTCTACGTCCACTCCAACCGTCAATTCTTTACAGAGTGCGTCGTCTACGGCACCGTTGATTTCATCTTCGGCAATGGCGCCGCCATCCTTCAAAAGTGCGACATCCGTCCACGTCGACCCAACTCCGGCCAGAAGAACATGGTCACCGCCCAAGGCCGAACCGACCCGAACCAAAACACCGGAATTGTCATCCAACATTGTAATATTGCTGCCTCCTCCGATCTCGCACCAGTTCTGAGCAGTTTCCCAACTTATCTCGGACGACCATGGAAGGAATACTCGAGGACGGTGGTTATGCAAACGGCGATAAGCAATGTGATAAACCCAGCCGGATGGCACATCTGGAACGGGGATTTCGCTCTCGACACATTGTTCTACGGCGAGTATAAGAATACCGGAGCCGGAGCGGACACATCGAACAGGGTGACATGGGAAGGGTTCAAATCCATTAACTCCTTCAAGGGCTACGGCAAGGTGGACGAGGCTGAAGCGAGAGAATTCCACCGGAAAACTCGCCGGCGACTTGTCATTCTTGTTGTTTCTGTCGTCGTCCTGATTGCTTTGATCGTCGGGGTAGTCGCCGGCACCGTGATTCACAAGCGGAGCGGTTCGTCTTCTTCGCCGTCAATGCAGTTAACTCCAACTGCTTCGATTAAAACTATTTGCAGCATGACGCAGTATCCAGCGTCTTGTATATCTTCACTCGAGGCCTCGAATACCACCGACCCGGAAGTTCTCTCCAAGTTTTCTCTCCGAGTCGCCATTAACGAGCTCTCCAAGCTCTCTCAGTACCCCACAAAGATCAGCACCAACGATACCAAGCTTAACGAGACCTTGTGGCTCTGTCGCGCTCTTTTCGAAGACGCCGTCGACAGACTCAACGACTCGATTTCAGCCATGGAAGTGGGCGAAGGAGAGAGGCTTTTGTCCGCGTCCAAAATCAACGACTTGAGAACATGGCTCAGCGCCACCATTACCGACCAGGAAACCTGCTTGGACGCTCTTCAAGATCTGAACTCCACTCTTGTAAACGACTTCAGAAATGCGATGGAAAACTCCACCGAGTTCGTCAGCAATAGTTTGGCCATTGCAACGAAAATTCTCGGTCCGTTGAGCGATTTCAACATTCCGATACACCGGAGGTTGCTCGGATTCAAAGGGTCGGACTCAAACTTTCCAGATTGGGTAAGCGCCGGAGATCGGAGGCTGCTGCAAGCGGAGAATGTGGTGGCGAACGTGACGGTGGCAACGGACGGGAGCGGAAACTACACGACGATCTCCGATGCGGTGAATTCCGTGCCAAAAAAGAGTACGGTGAGATTTATTATATACGTGAAGGAAGGAAGATACGAAGAGACGGTGAGATTGGATAAGAATACATGGAACGTTATGATGATCGGAGACGGAAAAACTAAGACCATTGTTTCCGGCAGCTTGAACTTTGTCGATGGCACTCCCACTTTCTCCACCGCTACATTCGCTGTTGCCGGGAAAGGATTCATCGCCAAGGACATCGGCTTTGTCAACACGGCCGGAGCAGCCAAGCATCAGGCAGTTGCATTCCGGTCAGATTCAGACCTTTCGGTCTACTTCGGCTGCTCATTCGATGCCTTCCAAGACACCCTCTACGCCCACTCCAATCGCCAATTCTATCGCAATTGCGACATTACGGGCACCATTGACTTCATTTTCGGCAACGCGGGTGTCGTCTTTCAGGGCTGCAATGTCATGCCTAGGCAGCCACTGGCCAACCAGTTCAACACCATCACAGCTCAAGGCAAAAAAGACCCTAATCAGAACACGGGCATTTCCATGCAAAAATGCACCTTTTCCCCTCTGCCTGGCGACAATCTCTCTGCTCCAACTTACCTTGGTCGACCATGGAAAGACTATTCCACCACTGTCATCATGCAGTCCAATATCGGCTCGTTCCTCAAACCCTTGGGTTGGATCGAATGGGTCATCGGCGTCGAGCCTCCCAAAACTATATTTTATGCCGAGTACCAGAACACCGGACCTGGCTCTGCCGTGGACAAAAGGATCAGTTGGGCTGGTTATAGGCCCACTATAACGGCGGAAGAAGCTGGAAAATTCACAGTCGACTCTTTCATTCAGGGCAGCGATTGGTTGCCGTCAACAAGAGTTGAATATGATGCATCTCTGTGA 3222 51.06 LSSFKTMIDVKPVMAGVPDSGSPPYVSELNKRKLLFWALSAVLLISDFIGVAVGVESRENSDEVETFHPSHSIIKTSCSSTLYPDLCVSAITSVDGASKKVSSPKDVIELSLNITIEAVKKNYLAIKKLRSREGLTKREKVAVNDCLDNMEDTLYELDKAVEDLHLYPTKKSLALHADDLKTLLSSTITNQESCLDGFSYSDADRKVRKVLLKAEIHIEKMCSNVLAMIKNMTDTDIINESKLMGRKQLTEEVGHDDLKWPDWLSGSDRRLLQSTSVTPNVVVAADGSGDYRTVSEAVAAAPSRTAVGENFLARDITFRNTAGPSKHQAVALRVGSDLSAFYRCEMDAYQDTLYVHSNRQFFTECVVYGTVDFIFGNGAAILQKCDIRPRRPNSGQKNMVTAQGRTDPNQNTGIVIQHCNIAASSDLAPVLSSFPTYLGRPWKEYSRTVVMQTAISNVINPAGWHIWNGDFALDTLFYGEYKNTGAGADTSNRVTWEGFKSINSFKGYGKVDEAEAREFHRKTRRRLVILVVSVVVLIALIVGVVAGTVIHKRSGSSSSPSMQLTPTASIKTICSMTQYPASCISSLEASNTTDPEVLSKFSLRVAINELSKLSQYPTKISTNDTKLNETLWLCRALFEDAVDRLNDSISAMEVGEGERLLSASKINDLRTWLSATITDQETCLDALQDLNSTLVNDFRNAMENSTEFVSNSLAIATKILGPLSDFNIPIHRRLLGFKGSDSNFPDWVSAGDRRLLQAENVVANVTVATDGSGNYTTISDAVNSVPKKSTVRFIIYVKEGRYEETVRLDKNTWNVMMIGDGKTKTIVSGSLNFVDGTPTFSTATFAVAGKGFIAKDIGFVNTAGAAKHQAVAFRSDSDLSVYFGCSFDAFQDTLYAHSNRQFYRNCDITGTIDFIFGNAGVVFQGCNVMPRQPLANQFNTITAQGKKDPNQNTGISMQKCTFSPLPGDNLSAPTYLGRPWKDYSTTVIMQSNIGSFLKPLGWIEWVIGVEPPKTIFYAEYQNTGPGSAVDKRISWAGYRPTITAEEAGKFTVDSFIQGSDWLPSTRVEYDASL 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45200804 45206485 + Bma010332.2 Bma13g01193 93922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01193 1073 PANTHER PECTINESTERASE 1-RELATED 24 304 - -
Bma13g01193 1073 PANTHER PECTINESTERASE 306 502 - -
Bma13g01193 1073 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 233 IPR035513 -
Bma13g01193 1073 SMART PMEI_2 69 228 IPR006501 GO:0004857
Bma13g01193 1073 SMART PMEI_2 565 715 IPR006501 GO:0004857
Bma13g01193 1073 PANTHER PECTINESTERASE 1-RELATED 306 502 - -
Bma13g01193 1073 Pfam Plant invertase/pectin methylesterase inhibitor 73 228 IPR006501 GO:0004857
Bma13g01193 1073 Pfam Plant invertase/pectin methylesterase inhibitor 569 715 IPR006501 GO:0004857
Bma13g01193 1073 SUPERFAMILY Pectin lyase-like 277 504 IPR011050 -
Bma13g01193 1073 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 569 720 IPR035513 -
Bma13g01193 1073 PANTHER PECTINESTERASE 24 304 - -
Bma13g01193 1073 PANTHER PECTINESTERASE 507 1070 - -
Bma13g01193 1073 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Bma13g01193 1073 PANTHER PECTINESTERASE 1-RELATED 507 1070 - -
Bma13g01193 1073 SUPERFAMILY Pectin lyase-like 763 1069 IPR011050 -
Bma13g01193 1073 CDD PMEI-like_3 76 233 - -
Bma13g01193 1073 Pfam Pectinesterase 764 1058 IPR000070 GO:0030599|GO:0042545
Bma13g01193 1073 Pfam Pectinesterase 306 504 IPR000070 GO:0030599|GO:0042545
Bma13g01193 1073 TIGRFAM PME_inhib: pectinesterase inhibitor domain 557 719 IPR006501 GO:0004857
Bma13g01193 1073 TIGRFAM PME_inhib: pectinesterase inhibitor domain 69 232 IPR006501 GO:0004857
Bma13g01193 1073 Gene3D - 758 1073 IPR012334 -
Bma13g01193 1073 Gene3D - 304 517 IPR012334 -
Bma13g01193 1073 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 233 IPR035513 -
Bma13g01193 1073 Gene3D Invertase/pectin methylesterase inhibitor family protein 566 719 IPR035513 -
Bma13g01193 1073 CDD PMEI-like_3 572 719 - -
Bma13g01193 1073 ProSitePatterns Pectinesterase signature 2. 908 917 IPR033131 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00666 Bma13g01193 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00666 Bma-Chr10:9652008 Bma13g01193 Bma-Chr13:45200804 1.02E-93 dispersed
Bma13g00619 Bma-Chr13:14730685 Bma13g01193 Bma-Chr13:45200804 1.14E-84 dispersed
Bma13g01193 Bma-Chr13:45200804 Bma14g00847 Bma-Chr14:9437581 7.89E-87 dispersed
Bma05g00269 Bma-Chr5:7592195 Bma13g01193 Bma-Chr13:45200804 2.57E-23 transposed
Bma08g00237 Bma-Chr8:2911100 Bma13g01193 Bma-Chr13:45200804 7.60E-16 transposed
Bma10g00706 Bma-Chr10:10721876 Bma13g01193 Bma-Chr13:45200804 9.58E-68 transposed
Bma10g00665 Bma-Chr10:9604969 Bma13g01193 Bma-Chr13:45200804 3.62E-117 wgd
Bma10g00705 Bma-Chr10:10678874 Bma13g01193 Bma-Chr13:45200804 1.35E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01193 - - jre:109004988 1265.75