Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01218 ATGAGTGACTGGTTGGGTTTTTCGCTTACTCCACACCTGAGAATCCATGAAAACTTCAATGGCGGACAAGAGGAGGAAGTGCAGAATCAAGATGCTAATTTTCCCCATTTTTCTGTCTTGCCATTGCGCTCTGATGGAACCCTTTGCGTTTCTGCTGATCCTTTCGGACGCATTAATGATTGGACATACGTGAGCTCAGCAAATGGCGGTGCCAATCCAAGCGAAGAAAGTCCAAAACTTGAAGATTTCCTGGGAAGTTGCTACCCAAATTCACCTCCGGCTGAAGCAAAAGCCTTCTGCACACAAACCCAAGAAGAAGAAACCAGATTTCTCTCGAAAAACAATGTGAACGTAGCGCCAAATTTCAACACCCATGACGAGATGGAGTTGGAAACAGGAGAGAATATGACAAACCCATCTCACTGCCTGATCCAACCTGATTATCCGCAAGCCTTAATCCCAAGTAACAATGCGTCTTACAAGTCTTGGTTGGGCCAAACCCAAGTATTTTCCGATCCGGCAAAATATTCCGGCGGGGGGAACGAGTCTAGTTTTCAGTCGCTGTCTCTAAGCATGAGCACAAGCTCACAGAATGTGGCCGTTAATCGCAAACGTCCAGTGGCTAGAGAACCAGTTCCAAGAAAATCAATCGATACTTTTGGACAGAGAACTTCGCAGTATCGCATAGATGGACCGGAAGATACGAAGCTCATCTCTGGGATAACAGCTGCAGAAAAGAAGGCCAAACCAGGAAAGGAAGGCAGGGTGAGATACTTTAATTTTCTCCAAGTTTCGTTTTGTTCCAGAAATTTTGAACCCTCTTATCCTAGATTCAACTCAAATGATGAGTTGCACTTTATGTGTGGTTATGATAAGGAAGAAAAGGCAGCAAGGGCCTATGACTTGGCCGCACTCAAGTATTGGGGAGCAACAACTCACATAAATTTTCCACTTTGTACTTACGAAAAAGAGCTGGAAGAGATGAAGAACATGAGCAGACAAGAGTTCGTCGCCAATTTGAGAAGGAAAAGTAGTGGGTTTTCGAGGGGAGCTTCGATGTACAGAGGGGTGACAAGCAGACACCATCAGCATGGACGATGGCAAGCCCGAATCGGAAGAGTTGCAGGAAACAAGGACTTGTACCTCGGCACATTCAGCACGCAAGAGGAAGCAGCGGAGGCCTACGACATTGCAGCGATAAAGTTCAGAGGAACGAGTGCGGTGACGAATTTCGACATTAGTCGATACGACGTCAAGAGAATTTGCTCGAGCACGACTTTAATTGCGGGTGATCTTGCAAAACGTTCCCCGAAAGAGTGCTGTCCTCGACCCGCTCTCGCCATCGAGGACTATAATTCGTGTGCATCGTCGACAACCTCTTCGCAGCAGCTCTTGGCCATTAATGGCGAAGCTTCCGAAGAGTACTCAGAAATGGTGTGGAGTGGTAACGGGGAAGATCACTGTCATCAACGCGGGAGTAGTAGTAGTACATCCATGGTGGCTTCGAGTAGTAGAAATCCCTCCAATCCATCAAATGGAGGTGACTACCCTCATGCTTATTATTCGGGAGAGGCTCAGTCCGACCAAAGCCGGGCCGGAAACGGTGGACTGGTTCATCAAGCTCCCATTTTTGAGCTGTGGAACGAATAG 1650 47.27 MSDWLGFSLTPHLRIHENFNGGQEEEVQNQDANFPHFSVLPLRSDGTLCVSADPFGRINDWTYVSSANGGANPSEESPKLEDFLGSCYPNSPPAEAKAFCTQTQEEETRFLSKNNVNVAPNFNTHDEMELETGENMTNPSHCLIQPDYPQALIPSNNASYKSWLGQTQVFSDPAKYSGGGNESSFQSLSLSMSTSSQNVAVNRKRPVAREPVPRKSIDTFGQRTSQYRIDGPEDTKLISGITAAEKKAKPGKEGRVRYFNFLQVSFCSRNFEPSYPRFNSNDELHFMCGYDKEEKAARAYDLAALKYWGATTHINFPLCTYEKELEEMKNMSRQEFVANLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSTTLIAGDLAKRSPKECCPRPALAIEDYNSCASSTTSSQQLLAINGEASEEYSEMVWSGNGEDHCHQRGSSSSTSMVASSSRNPSNPSNGGDYPHAYYSGEAQSDQSRAGNGGLVHQAPIFELWNE 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45455279 45457959 - Bma010361.1 Bma13g01218 93947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01218 549 PRINTS Ethylene responsive element binding protein signature 394 414 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 PRINTS Ethylene responsive element binding protein signature 354 365 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 SUPERFAMILY DNA-binding domain 281 318 IPR016177 GO:0003677
Bma13g01218 549 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 500 - -
Bma13g01218 549 PANTHER PUTATIVE, EXPRESSED-RELATED 23 500 - -
Bma13g01218 549 ProSiteProfiles AP2/ERF domain profile. 353 412 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 MobiDBLite consensus disorder prediction 482 536 - -
Bma13g01218 549 SUPERFAMILY DNA-binding domain 352 414 IPR016177 GO:0003677
Bma13g01218 549 MobiDBLite consensus disorder prediction 487 515 - -
Bma13g01218 549 ProSiteProfiles AP2/ERF domain profile. 251 317 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 Gene3D AP2/ERF domain 353 414 IPR036955 GO:0003700|GO:0006355
Bma13g01218 549 Gene3D AP2/ERF domain 267 319 IPR036955 GO:0003700|GO:0006355
Bma13g01218 549 SMART rav1_2 277 323 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 SMART rav1_2 353 418 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 CDD AP2 352 414 IPR001471 GO:0003700|GO:0006355
Bma13g01218 549 Pfam AP2 domain 354 404 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00024 Bma-Chr5:1876250 Bma13g01218 Bma-Chr13:45455279 1.64E-76 dispersed
Bma09g00268 Bma-Chr9:14727677 Bma13g01218 Bma-Chr13:45455279 2.15E-26 dispersed
Bma13g01218 Bma-Chr13:45455279 Bma14g01163 Bma-Chr14:16921957 9.06E-82 dispersed
Bma13g01218 Bma-Chr13:45455279 Bma07g01409 Bma-Chr7:49858960 1.59E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58274 PF00847 AP2 2.60E-08 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01218 K09285 - qsu:112020712 535.028