Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01231 ATGTTGAAGGGGTTGTCGTTCAATCAGCAGACTCAGGAGGAAAACATGTCGAATTTGACTTCAGCATCTGGAGAAGCTAGCGTGTCTTCAGGCAACAGAAACGAGATTGGTTGCCAGTACTTTAGCCAACAACTTCAAACTGATCAACCCACCAAAAAGAAAAGAAGTCTTCCGGGAAATCCAGACCCAGATGCAGAAGTGATAGCTTTATCTCCAAAAACACTGTTGGCAACGAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTGCACAGGAGAGGGCACAATTTACCATGGAAGCTGAAGCAAAGAACGAGCGAAGAGGTGAAGAAGAAGGTGTACGTCTGCCCAGAATCAAGCTGCGTCCACCATGATCCGTCGAGGGCGCTTGGAGACCTCACAGGAATCAAAAAGCATTTCAGCAGAAAACATGGAGAGAAGAGGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCTGTTCAATCGGATTGGAAGGCTCATTCTAAAACCTGTGGCACCAGGGAGTACAGATGCGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACTCATCGAGCTTTCTGTGATGCTTTAGCCGAGGAAAATGCCAGAGCCATTACAGCCAATCCACTTCTCTCCTCATCTCATCAACCACTAGACTCTTCAATGGCTACTCTTCAAGATCTCTCTCCATTTTCCTTGAAGAAAGAGCAGCAGAGCTTCACTCTTCCGCCATGGTTACCCACTCCATCACCTCTAGACAACATTTCATCTCCATCCTCAATCTTCTCCCCGAGACTGAACCAAGACTTCACACAGCAAACCCAAAACCCTAACCCTAATCCTGGACCCACTCTCCCTTGCTATCAGTCAGTAGCTTCTTCCCCACACATGTCAGCCACTGCACTGCTGCAGAAGGCAGCTCAGATGGGAGCGACCATGAGTGCAAAGACAGATGTATCACAGCCCATACTCAGGACCCACAGCCAGGCTCACGTGTCTGATTCAACCACCAATACAGGCAGTGCTGTCAGAGCCTTTGCCCACAATTCTTTGTCCATATATGGGAATAAAGCTGCTTCTGTTTCAGTTCCTTCTGCCAGTTTTACGAGTGCAGCCCCAAGCGTCCTTCCTAACCCAACTTCGTTTCATGAGTTGATGATGACGTCTCTCTCTTCCCCGCCTGGGTTTGAAGATTCATCTTTTGAAGAAGCTTTTGGTGGGTTTTTGAGCTCGAGAAAAGACGCATCTACAAAAACAACCACCGCCGGCGACGAAGTGACCGCCGCCGTTGGTGGGGGTGAAGGTTTGACAAGAGATTTTCTGGGGCTGCGAGCTTTCTCTCACGGTGATATCCTAAACATTGTTGGTTTTAGCAACTGCCTAAACACATCTCAACCTCATCAGAACCAAACAAAGAGTACATGGCAAGGTTAG 1467 47.58 MLKGLSFNQQTQEENMSNLTSASGEASVSSGNRNEIGCQYFSQQLQTDQPTKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSEEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFSRKHGEKRWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEENARAITANPLLSSSHQPLDSSMATLQDLSPFSLKKEQQSFTLPPWLPTPSPLDNISSPSSIFSPRLNQDFTQQTQNPNPNPGPTLPCYQSVASSPHMSATALLQKAAQMGATMSAKTDVSQPILRTHSQAHVSDSTTNTGSAVRAFAHNSLSIYGNKAASVSVPSASFTSAAPSVLPNPTSFHELMMTSLSSPPGFEDSSFEEAFGGFLSSRKDASTKTTTAGDEVTAAVGGGEGLTRDFLGLRAFSHGDILNIVGFSNCLNTSQPHQNQTKSTWQG 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45549782 45551851 + Bma010374.1 Bma13g01231 93960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01231 488 MobiDBLite consensus disorder prediction 1 30 - -
Bma13g01231 488 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
Bma13g01231 488 SMART c2h2final6 81 103 IPR013087 -
Bma13g01231 488 SMART c2h2final6 157 177 IPR013087 -
Bma13g01231 488 SMART c2h2final6 122 152 IPR013087 -
Bma13g01231 488 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Bma13g01231 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 470 - -
Bma13g01231 488 Pfam Zinc finger, C2H2 type 81 103 IPR013087 -
Bma13g01231 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Bma13g01231 488 Gene3D Classic Zinc Finger 135 215 - -
Bma13g01231 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 470 - -
Bma13g01231 488 MobiDBLite consensus disorder prediction 263 289 - -
Bma13g01231 488 MobiDBLite consensus disorder prediction 253 302 - -
Bma13g01231 488 Gene3D Classic Zinc Finger 60 131 - -
Bma13g01231 488 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00070 Bma-Chr9:1759035 Bma13g01231 Bma-Chr13:45549782 1.17E-117 dispersed
Bma13g01231 Bma-Chr13:45549782 Bma15g01004 Bma-Chr15:39068700 2.09E-117 dispersed
Bma01g02212 Bma-Chr1:79042450 Bma13g01231 Bma-Chr13:45549782 1.02E-128 transposed
Bma15g00620 Bma-Chr15:7892269 Bma13g01231 Bma-Chr13:45549782 3.97E-120 transposed
Bma13g01231 Bma-Chr13:45549782 Bma09g00967 Bma-Chr9:49199775 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58277 PF00096 zf-C2H2 0.0049 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01231 K25870 - qsu:111995117 611.683