Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma13g01231 | ATGTTGAAGGGGTTGTCGTTCAATCAGCAGACTCAGGAGGAAAACATGTCGAATTTGACTTCAGCATCTGGAGAAGCTAGCGTGTCTTCAGGCAACAGAAACGAGATTGGTTGCCAGTACTTTAGCCAACAACTTCAAACTGATCAACCCACCAAAAAGAAAAGAAGTCTTCCGGGAAATCCAGACCCAGATGCAGAAGTGATAGCTTTATCTCCAAAAACACTGTTGGCAACGAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTGCACAGGAGAGGGCACAATTTACCATGGAAGCTGAAGCAAAGAACGAGCGAAGAGGTGAAGAAGAAGGTGTACGTCTGCCCAGAATCAAGCTGCGTCCACCATGATCCGTCGAGGGCGCTTGGAGACCTCACAGGAATCAAAAAGCATTTCAGCAGAAAACATGGAGAGAAGAGGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCTGTTCAATCGGATTGGAAGGCTCATTCTAAAACCTGTGGCACCAGGGAGTACAGATGCGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACTCATCGAGCTTTCTGTGATGCTTTAGCCGAGGAAAATGCCAGAGCCATTACAGCCAATCCACTTCTCTCCTCATCTCATCAACCACTAGACTCTTCAATGGCTACTCTTCAAGATCTCTCTCCATTTTCCTTGAAGAAAGAGCAGCAGAGCTTCACTCTTCCGCCATGGTTACCCACTCCATCACCTCTAGACAACATTTCATCTCCATCCTCAATCTTCTCCCCGAGACTGAACCAAGACTTCACACAGCAAACCCAAAACCCTAACCCTAATCCTGGACCCACTCTCCCTTGCTATCAGTCAGTAGCTTCTTCCCCACACATGTCAGCCACTGCACTGCTGCAGAAGGCAGCTCAGATGGGAGCGACCATGAGTGCAAAGACAGATGTATCACAGCCCATACTCAGGACCCACAGCCAGGCTCACGTGTCTGATTCAACCACCAATACAGGCAGTGCTGTCAGAGCCTTTGCCCACAATTCTTTGTCCATATATGGGAATAAAGCTGCTTCTGTTTCAGTTCCTTCTGCCAGTTTTACGAGTGCAGCCCCAAGCGTCCTTCCTAACCCAACTTCGTTTCATGAGTTGATGATGACGTCTCTCTCTTCCCCGCCTGGGTTTGAAGATTCATCTTTTGAAGAAGCTTTTGGTGGGTTTTTGAGCTCGAGAAAAGACGCATCTACAAAAACAACCACCGCCGGCGACGAAGTGACCGCCGCCGTTGGTGGGGGTGAAGGTTTGACAAGAGATTTTCTGGGGCTGCGAGCTTTCTCTCACGGTGATATCCTAAACATTGTTGGTTTTAGCAACTGCCTAAACACATCTCAACCTCATCAGAACCAAACAAAGAGTACATGGCAAGGTTAG | 1467 | 47.58 | MLKGLSFNQQTQEENMSNLTSASGEASVSSGNRNEIGCQYFSQQLQTDQPTKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSEEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFSRKHGEKRWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEENARAITANPLLSSSHQPLDSSMATLQDLSPFSLKKEQQSFTLPPWLPTPSPLDNISSPSSIFSPRLNQDFTQQTQNPNPNPGPTLPCYQSVASSPHMSATALLQKAAQMGATMSAKTDVSQPILRTHSQAHVSDSTTNTGSAVRAFAHNSLSIYGNKAASVSVPSASFTSAAPSVLPNPTSFHELMMTSLSSPPGFEDSSFEEAFGGFLSSRKDASTKTTTAGDEVTAAVGGGEGLTRDFLGLRAFSHGDILNIVGFSNCLNTSQPHQNQTKSTWQG | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 45549782 | 45551851 | + | Bma010374.1 | Bma13g01231 | 93960 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma13g01231 | 488 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Bma13g01231 | 488 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 177 | IPR036236 | - | |
Bma13g01231 | 488 | SMART | c2h2final6 | 81 | 103 | IPR013087 | - | |
Bma13g01231 | 488 | SMART | c2h2final6 | 157 | 177 | IPR013087 | - | |
Bma13g01231 | 488 | SMART | c2h2final6 | 122 | 152 | IPR013087 | - | |
Bma13g01231 | 488 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 83 | 103 | IPR013087 | - | |
Bma13g01231 | 488 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 470 | - | - | |
Bma13g01231 | 488 | Pfam | Zinc finger, C2H2 type | 81 | 103 | IPR013087 | - | |
Bma13g01231 | 488 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 81 | 103 | IPR013087 | - | |
Bma13g01231 | 488 | Gene3D | Classic Zinc Finger | 135 | 215 | - | - | |
Bma13g01231 | 488 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 18 | 470 | - | - | |
Bma13g01231 | 488 | MobiDBLite | consensus disorder prediction | 263 | 289 | - | - | |
Bma13g01231 | 488 | MobiDBLite | consensus disorder prediction | 253 | 302 | - | - | |
Bma13g01231 | 488 | Gene3D | Classic Zinc Finger | 60 | 131 | - | - | |
Bma13g01231 | 488 | MobiDBLite | consensus disorder prediction | 44 | 64 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma09g00070 | Bma-Chr9:1759035 | Bma13g01231 | Bma-Chr13:45549782 | 1.17E-117 | dispersed | |
Bma13g01231 | Bma-Chr13:45549782 | Bma15g01004 | Bma-Chr15:39068700 | 2.09E-117 | dispersed | |
Bma01g02212 | Bma-Chr1:79042450 | Bma13g01231 | Bma-Chr13:45549782 | 1.02E-128 | transposed | |
Bma15g00620 | Bma-Chr15:7892269 | Bma13g01231 | Bma-Chr13:45549782 | 3.97E-120 | transposed | |
Bma13g01231 | Bma-Chr13:45549782 | Bma09g00967 | Bma-Chr9:49199775 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58277 | PF00096 | zf-C2H2 | 0.0049 | CL0361 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma13g01231 | K25870 | - | qsu:111995117 | 611.683 |