Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g01236 ATGATGAATCTGGAGCAGAAGCGGGGCAAGCAAGAGAAAGGTTCGGACGAAGCCGAAAAAGTAGTTGTGGCCGTGAAGGCATCAAAAGAAATCCCCAAGACTGCGTTGGTTTGGGCATTGACTCATGTTGTTCAACCTGGGGATTGCATAACACTTCTTGTAGTTGTCCCCTCACAAAGCTCTGGTAGAAAATTGTGGGGTTTCCCGAGATTTGCTGGGGATTGTGCCAATGGTCACAAAAAGTCTAATTTAAGTGCAAGCCCGGACCAGAAGTGCAATATTATTACTGATTCGTGCTCCCAGATGATCCTTCAACTTCATGATGTTTACGATCCAAATAAGATAAATGTTAAGATAAAAATTATATCTGGGTCCCCTAGTGGAGCAGTGGCTGTAGAGGCAAAGAGAGCTCAGGCCAGTTGGGTTGTATTAGACAAGCAGCTCAAACATGAGGAGAAGCGGTGCATGGAAGAGCTCCAATGCAACATTGTTGTCATGAAGCGTTCCCAGCCAAAAGTTCTTCGCTTGAATTTGGTTGGTTCACCTAAGAAGGAACCCGAAATTGTCTCTTCATTAGGTTCTGATCCGGATGAAGGGTCTGAGAATAATCAGGGAAAAAAGAACCATTCTCTCAATACCATTCGCGGCCCTTTAGTGACTCCAAATAGTAGTCCAGAGCTTGGTACTCCATTTACCACCACGGAAGCTGGAACTTCATCAGTGTCAAGCTCTGATCCGGGGACATCACCTTTTTTCATACCTGAAATTAGTCGAGATCTGAAGAAAGATGAATCATTAGTAATTAAGGAAAACAAAGAACTTGGCGATACAAGTTCAGATTCAGACTGTGACAATTTGTCGGTATCTTCAACAAGTATGAGATTCCAACCATGGATGACAGAATTTATAAATGCTCATTATCCACCCTTGCAACAAGGGAGCGTGATATCAAACAGAAGTAATGATAAGGCTCATGCAACAACAGGCAAAACTTTGCTACAAACGTTTTCAAAAACTGATGCAGAAGCCGGAATTAGAATGCCAAAACACAGAAATGATTCTGACTTTGATGGCAACGTAAGAGAAGCAGTCTTGTTATCCAGAAATATGCCCCTCGGACCCCCTCCACTGTGTTCAATATGCCAACATAAAGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGCTGGAGCTTGCTACTGGCGGATTTTCGCAAGCCAATTTCTTGGCTGAAGGAGGTTTTGGATCAGTTTACAGAGGAGTTCTACCTGATGGTCAAGCTGTTGCTGTCAAGCAACATAAACTGGCCAGTTCTCAAGGAGACCTTGAGTTTTGTTCAGAAGTGGAAGTCCTTAGCTGTGCTCAACATCGTAATGTTGTTATGTTGATTGGCTTCTGCATTGAGGACAAAAGAAGGTTATTAGTGTATGAATATATCTGCAATGGCTCATTGGATTCTCATCTATATGGACGTCAACGAGAGCCACTAGAATGGTCTGCTCGACAAAAAGTTGCTGTTGGGGCCGCGAGAGGACTGCGATATCTCCACGAAGAATGTAGAGTGGGCTGCATTGTTCACCGTGATATGCGACCAAATAACATTCTTGTCACTCATGATTTCGAACCACTGGTTGGGGACTTTGGCCTGGCAAGGTGGCAGCCAGATGGAGATAAGGGTGTGGAAACAAGAGTAATTGGAACTTTTGGGTACTTGGCTCCTGAATACGCACAAAGTGGTCAAATCACAGAGAAGGCAGATGTTTATTCCTTTGGCGTGGTGTTGGTGGAGCTCATTACCGGGAGAAAAGCGGTGGATCTTAACCGACCCAAAGGCCAACAATGTCTCACTGAGTGGGCACGGCCTTTGTTGGAAGATTTAGCCATTGATGATCTGATTGATCCGAGATTGGGGAACGTGTATTCAGAGCATGACGTTTACTGCATGCTACACGCTGCCTCACTATGCATACGGAGGGATCCCAATGCTCGGCCTCGCATGTCCCAGGTGCTGCGAGTTCTGGAGGGTGACATGGTGATGGATGGAAATTACATGTCAACACCCGGATATGAAGAGGGAAGCCGGAGTGGTAGGATATGGGTGGAACAACAGCAGCACCAACAACGCTGTCACAGCGGTTCGGGTCCCATTTCCATATAG 2169 45.41 MMNLEQKRGKQEKGSDEAEKVVVAVKASKEIPKTALVWALTHVVQPGDCITLLVVVPSQSSGRKLWGFPRFAGDCANGHKKSNLSASPDQKCNIITDSCSQMILQLHDVYDPNKINVKIKIISGSPSGAVAVEAKRAQASWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPEIVSSLGSDPDEGSENNQGKKNHSLNTIRGPLVTPNSSPELGTPFTTTEAGTSSVSSSDPGTSPFFIPEISRDLKKDESLVIKENKELGDTSSDSDCDNLSVSSTSMRFQPWMTEFINAHYPPLQQGSVISNRSNDKAHATTGKTLLQTFSKTDAEAGIRMPKHRNDSDFDGNVREAVLLSRNMPLGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVYRGVLPDGQAVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDKGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLNRPKGQQCLTEWARPLLEDLAIDDLIDPRLGNVYSEHDVYCMLHAASLCIRRDPNARPRMSQVLRVLEGDMVMDGNYMSTPGYEEGSRSGRIWVEQQQHQQRCHSGSGPISI 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 45626188 45630011 - Bma010383.1 Bma13g01236 93965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g01236 722 CDD USP_Like 20 144 - -
Bma13g01236 722 MobiDBLite consensus disorder prediction 185 250 - -
Bma13g01236 722 CDD STKc_IRAK 413 679 - -
Bma13g01236 722 SUPERFAMILY Protein kinase-like (PK-like) 391 682 IPR011009 -
Bma13g01236 722 Gene3D Transferase(Phosphotransferase) domain 1 483 688 - -
Bma13g01236 722 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
Bma13g01236 722 Pfam Protein tyrosine and serine/threonine kinase 411 674 IPR001245 GO:0004672|GO:0006468
Bma13g01236 722 MobiDBLite consensus disorder prediction 195 250 - -
Bma13g01236 722 ProSitePatterns Tyrosine protein kinases specific active-site signature. 528 540 IPR008266 GO:0004672|GO:0006468
Bma13g01236 722 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 710 - -
Bma13g01236 722 Gene3D HUPs 5 181 IPR014729 -
Bma13g01236 722 PANTHER OS01G0253100 PROTEIN 16 710 IPR045271 GO:0004714|GO:0006468
Bma13g01236 722 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00748 Bma13g01236 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00758 Bma-Chr10:12142001 Bma13g01236 Bma-Chr13:45626188 0 dispersed
Bma13g01236 Bma-Chr13:45626188 Bma15g00105 Bma-Chr15:1126644 6.79E-99 dispersed
Bma01g00880 Bma-Chr1:8255810 Bma13g01236 Bma-Chr13:45626188 5.60E-94 transposed
Bma04g00192 Bma-Chr4:1714569 Bma13g01236 Bma-Chr13:45626188 0 transposed
Bma10g00748 Bma-Chr10:11821441 Bma13g01236 Bma-Chr13:45626188 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66864 PF07714 PK_Tyr_Ser-Thr 3.80E-41 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g01236 - - zju:107404004 1177.16