Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00074 ATGGGTGGGAAACTCAAAGAAGCGACCTCCCTAAGCGAACCACTGGCCCAAGAAATTCCATCAATCACAGACGTTCAATCCGAGAAGAGGAAAGCGAAGAAGAAGAAAACTAGAGACGCTAGTTCTGAGCAATTTATCGAAGCCAATCCCAAGAGAAAACTCCCGGAGGTTGAGTTTTGCGAGAGCAATGGTGTGAAGCCTAAAAAGAAGAAGGACAAGCACAAGAAGGTCCACGACGGCAAAAAGGAAGGTGAAACGCGTGGAGATGAAGAAGAGTTGCAAGAAACTGAGGCGATTAGTAAAGGAAACGTGGTAGTCACTGGACAGCATGTGAAAGAGGGACAATACGCTTCGTTGAAGTCATTTGATGAATCAGGCCTACCAGATGAAGTCCTCGAGTGTTGTAAAAATTTTACGAGCCCTTCGCCGATTCAATCCCACGCCTGGCCATTTTTGTTGCACGGACGTGATTTTATAGGCATTGCTGCCACTGGGTCAGGGAAGACTTTGGCATTTGGGGTACCTGGAATTATGCATGTCTTGAAGAAGAGAAATGGAAAAATGCCCAGAGGGAGGAATCCTCTTTGCCTTGTACTCTCACCTACGAGGGAATTAGCTCAACAAATTTCAGATGTGTTGTGTGATGCTGGTAAACCATGCGGTGTAACATCAGTTTGCTTGTATGGGGGAACCTCAAAAGGACCTCAAATATCAGCTCTAAAGTCTGGCATTGATATTGTTATTGGAACTCCTGGACGTTTGAAGGATCTGATCGAAATGGAGGTCTGCTGCCTTAAGGAAGTATCATATGTGGTTCTCGATGAAGCTGATCGAATGTTAGACATGGGATTTGAACCTGAAGTTCGCTCAATATTGAGCCAGACATGTTCTGCTCGTCAAATGGTAATGTTTAGTGCTACATGGCCGCTACTTGTCCATCAATTGGCTCAAGAATTTATGGATCCTAACCCGGTTAAGGTCGTTGTCGGTTCAGAAGATTTGTCTGCCAACCATGATGTTATGCAAATAGTTGAGGTTTTGGATGATTATTCACGTGATCAACGTTTGGTTGCTCTGCTAGAGAAGTACCACAAATCACAGAGGAATAGAGTATTAGTTTTTGTCTTGTACAAGAATGAAGCTGATCGAGTAGAAAAGATGTTGCAGAGAAGGGGTTGGAACGCTGTTTCTATACATGGGGATAAAGCGCAATCTGCACGTACAAAGGCACTTTCATTATTTAAGGAGGGGACCAGTCCTTTGATGATTGCTACTGATGTGGCTGCTCGAGGATTGGATATTCCTGATGTTGAAGTTGTAATTAATTACAGTTTTCCTCTCACAACAGAGGATTATGTCCACCGAATTGGAAGAACTGGAAGGGCTGGTAAGAAAGGTGTTGCTCACACTTTCTTCACGCAGCAAAACAAGGGACTTGCTGGGGAGCTAGTGAATGTTCTCAGAGAAGCGGGCCAAATTGTACCTGATGCTCTCCTAAAGTTTGGTACTCACGTAAAGAAGAAGGAATCCAAGTTGTATGGAGCTCACTTCAGAGAAATCTCTGTGGATGCTCCAAAGTCTAAGAAAATAACTTTCAATGACTCTGAAGATGACTACTGA 1620 43.89 MGGKLKEATSLSEPLAQEIPSITDVQSEKRKAKKKKTRDASSEQFIEANPKRKLPEVEFCESNGVKPKKKKDKHKKVHDGKKEGETRGDEEELQETEAISKGNVVVTGQHVKEGQYASLKSFDESGLPDEVLECCKNFTSPSPIQSHAWPFLLHGRDFIGIAATGSGKTLAFGVPGIMHVLKKRNGKMPRGRNPLCLVLSPTRELAQQISDVLCDAGKPCGVTSVCLYGGTSKGPQISALKSGIDIVIGTPGRLKDLIEMEVCCLKEVSYVVLDEADRMLDMGFEPEVRSILSQTCSARQMVMFSATWPLLVHQLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDDYSRDQRLVALLEKYHKSQRNRVLVFVLYKNEADRVEKMLQRRGWNAVSIHGDKAQSARTKALSLFKEGTSPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFREISVDAPKSKKITFNDSEDDY 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 889912 896189 + Bma010477.2 Bma14g00074 94055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00074 539 Pfam DEAD/DEAH box helicase 143 309 IPR011545 GO:0003676|GO:0005524
Bma14g00074 539 CDD DEADc 136 327 - -
Bma14g00074 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 476 IPR027417 -
Bma14g00074 539 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 525 - -
Bma14g00074 539 MobiDBLite consensus disorder prediction 78 96 - -
Bma14g00074 539 Gene3D - 330 505 IPR027417 -
Bma14g00074 539 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Bma14g00074 539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 502 IPR001650 -
Bma14g00074 539 MobiDBLite consensus disorder prediction 37 67 - -
Bma14g00074 539 SMART helicmild6 382 463 IPR001650 -
Bma14g00074 539 SMART ultradead3 137 343 IPR014001 -
Bma14g00074 539 MobiDBLite consensus disorder prediction 1 96 - -
Bma14g00074 539 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 146 IPR014014 GO:0003724
Bma14g00074 539 CDD SF2_C_DEAD 340 472 - -
Bma14g00074 539 PANTHER BNAA08G07020D PROTEIN 1 525 - -
Bma14g00074 539 Pfam Helicase conserved C-terminal domain 354 463 IPR001650 -
Bma14g00074 539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 326 IPR014001 -
Bma14g00074 539 Gene3D - 75 329 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00074 K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:3.6.4.13] - mnt:21405606 794.653
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01085 Bma-Chr7:43605512 Bma14g00074 Bma-Chr14:889912 1.37E-77 dispersed
Bma14g00074 Bma-Chr14:889912 Bma14g00719 Bma-Chr14:7898068 5.88E-91 dispersed
Bma14g00074 Bma-Chr14:889912 Bma11g00266 Bma-Chr11:2354481 2.98E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g793 . . . . . . . Bma14g00074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008343 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00074 Bma_Chr14 FPKM 36.604359 38.577789 56.112026 55.253815 25.953854 23.055315 25.656469 2.083028 1.728661 1.910775