Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00076 ATGGTGGAGAGACGAATGTATTTATCTAAAGAGGCCAAAAGTGGGTTAGAATTTCTGAAGAGAAAAAGGCTTCAGAGAATGAACGCACAAACTGCTTCTGAAACTGTATCTGTCACTAACATGATTGCAAGAAGTGGAGGAGATGCTTTGAGAGCTTCAACGCCATGCGGATTAAGATTAATTGGTAATTCTGATTCATTTTCTCAGTCAATTAGTCCCTCAAATGCAAAGGATTTCTTCTCAAAACGCCAAGTGGAAAAATTTAACGCTAGCAATTTAGACTGGATTGAAAAGATTCCAGAATGCCCTGTATACTGTCCATCAAAGGAAGAATTTGAAGACCCTTTGGTTTATTTGCAAAAGATTGCTCCACAAGCCTCAAAATATGGTATATGCAAAATTGTCTCCCCTGTAAGTGCTTCTGTCCCAGCTGGGGTGGTGTTAATGAAGGAAAAAGCTGGATTTAAGTTTACTACCAGGGTGCAACCTCTTCGCCTAGCTGAGTGGGACACGGAGGACAGAATCACATTTTTCATGAGTGGAAGAAATTATACTTTTCGCGATTTTGAGAAAATGGCCAACAAGGTTTTTGCACGAAGATACTGTAGTTCTTCCTGTCTCCCTTCCGCATATTTGGAGAAAGAGTTTTGGCAAGAAATTTCTAGTGGAAAAACAGAAACAGTTGAATATGCATGTGATGTAGATGGTAGTGCCTTTTCATCTTCTCAAAATGACGAGCTTGGTAATAGCAAATGGAATTTGAAGAAACTTTCACGCTTGCCCAAGTCTATTTTGCGGCTGTTGGAAACAGCAATTCCGGGAGTGACTGATCCCATGCTTTACATTGGTATGCTGTTTAGTATATTTGCTTGGCATGTGGAGGATCATTATTTGTACAGTATTAATTATCATCACTGTGGAGCTTCAAAAACGTGGTACGGCATCCCTGGCCATGCTGCTTTGGAATTTGAAAAGGTTGCGAGGGAGCATGTATACACCAATGATATATTGTCGATTGATGGGGAAAATGGAGCTTTTGATGTCCTACTGGGGAAAACAACTCTATTTCCTCCGAATATTCTGTTGGAACATGATGTCCCCGTGTACAAGGCTGTGCAAAACCCTGGGGAGTTTATCATTACATTTCCTAGAGCATACCATGCAGGATTTAGTCATGGCTTTAATTGTGGTGAGGCTGTGAACTTTGCGATTGATGATTGGTTCCCTTTGGGTGAGGTGGCCAGCCGACAGTATGCAGCTCTTAATAGGGTGCCTCTACTTCCTCATGAAGAACTTCTGTGTAAAGAAGCAATGCTTTTGCATAAGAGTTTAGAACTTGAAGACTTGAATCATTTATCTGCAGATTTTGTCTCTCATCGTTCCATCAAGGCTTCTTTTGCTAGTCTAGTTCGGTTCCAGCATTGTGCTCGATGGTTGCTGATGAAATCGAAGGCATGCACTGGTGTCGCTGTAAATTGTCATGGGACCATCCTTTGTAGTTTATGCAAACGCGACTGTTACATAGCTTATGTTAACTGCAGCTGTTATGGACATCCAGTTTGCCTTCGCCACGATATTCTGTCTCTGGACTTCTCTTGTGGAGGCAACCATACTCTTTATTTGCGGGAGGGTGTTTCGGACATGGAACTTGCAGCCCAGAAGTTTGAGCAGGAAGTAGGGATATCAGGACGAAATCAGTGGACAAGCTGGAGCGATTGA 1719 42.06 MVERRMYLSKEAKSGLEFLKRKRLQRMNAQTASETVSVTNMIARSGGDALRASTPCGLRLIGNSDSFSQSISPSNAKDFFSKRQVEKFNASNLDWIEKIPECPVYCPSKEEFEDPLVYLQKIAPQASKYGICKIVSPVSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDRITFFMSGRNYTFRDFEKMANKVFARRYCSSSCLPSAYLEKEFWQEISSGKTETVEYACDVDGSAFSSSQNDELGNSKWNLKKLSRLPKSILRLLETAIPGVTDPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFEKVAREHVYTNDILSIDGENGAFDVLLGKTTLFPPNILLEHDVPVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFAIDDWFPLGEVASRQYAALNRVPLLPHEELLCKEAMLLHKSLELEDLNHLSADFVSHRSIKASFASLVRFQHCARWLLMKSKACTGVAVNCHGTILCSLCKRDCYIAYVNCSCYGHPVCLRHDILSLDFSCGGNHTLYLREGVSDMELAAQKFEQEVGISGRNQWTSWSD 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1019152 1025249 + Bma010482.1 Bma14g00076 94057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00076 572 Pfam jmjN domain 103 135 IPR003349 -
Bma14g00076 572 SUPERFAMILY Clavaminate synthase-like 180 435 - -
Bma14g00076 572 SMART cupin_9 246 419 IPR003347 -
Bma14g00076 572 SMART JmjN_1 101 142 IPR003349 -
Bma14g00076 572 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 30 563 - -
Bma14g00076 572 PANTHER LYSINE-SPECIFIC DEMETHYLASE 30 563 - -
Bma14g00076 572 Pfam JmjC domain, hydroxylase 279 402 IPR003347 -
Bma14g00076 572 ProSiteProfiles JmjC domain profile. 249 419 IPR003347 -
Bma14g00076 572 Gene3D Cupin 95 424 - -
Bma14g00076 572 Pfam C5HC2 zinc finger 499 549 IPR004198 -
Bma14g00076 572 ProSiteProfiles JmjN domain profile. 102 143 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00076 - - - cit:102611554 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00902 Bma-Chr7:31532763 Bma14g00076 Bma-Chr14:1019152 0 dispersed
Bma14g00076 Bma-Chr14:1019152 Bma14g00887 Bma-Chr14:10046779 4.29E-57 dispersed
Bma14g00076 Bma-Chr14:1019152 Bma01g01602 Bma-Chr1:41342084 5.27E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58288 PF02373 JmjC 6.50E-40 CL0029 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00076 Bma_Chr14 FPKM 56.984116 60.810413 49.194054 47.355896 65.144691 72.12648 66.300835 42.606625 43.975677 46.461979