Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00100 ATGGGCTGTGTTTCTTCCCATCTTCTCCACCATGACGACGAGTTAACAAAACTCGGAAGCTCTGCGCTGAGTCAACACATCGTCTCTCTCACTTCCACCACTTATGGCCTGCTCACCCTCGATCCTCCTCCGTCCCATCAAACCCCCGCTCCGAGCACTCCGCCTACCCCGCCCACCCGGTTCCCGCACGGATCTGCTTCCCCGCTCCCTCTCTCCGAACCCAAGTCGCTGTGGTCCGAACCTGAAATCATTAACTCTTGGGAACTCATGGCCGGTCTTGACGCTGACAGTTTCCGTTTCAAGCCCTTCACAATCCGAGATTCAATTTCCAACAAGGAAAACTCAAACCCAAATTTGGCGAAGCCAATCATTCAAACCAGAGTTTCAAAGCCATTTAGCGATGTTACGAAGAAGCATTTGTTGGATAAATATGAGAGAATATGTCCACCCAATGGAGAAAACAGAGTGGTGGTCTATACAACATCGTTGCGAGGCATCCGGAAGACTTTCGAAGCCTGCAATGGCGTAAAGGCTGTAATCGACGGCGCCGGCTTTCTAATCTGTGAGCGAGACATCTCAATGGATCGCGGATTCAGAGAAGAGTTGAGGGAATTAATGAAAGGGAAGGAGAGAGAAGCAATAGTTCCTCCTAGAGTGTTCGTCAAGGGGAAATACATAGGTGGGATTGAGGAGCTTTCGAAAATGGCGGAAGAGGGTCGCCTAACTGAGCTACTAGAAGGGTTGCCGAAGAAAAGAGTTGGGTCTGTTTGTGAAGGATGTGGGGATGCTAGATTTCTGCCATGTTTTCAGTGCAATGGAAGCTGTAAATTGGCTATGGCGGTGAAAGAAGGAATGGATCAAAAACAGGGAAGAAGAATTGTCGTCGTTCATTGTCCGAATTGCAACGAAAATGGGTTAGTCGTCTGCCCTATTTGTAGCTGA 942 48.94 MGCVSSHLLHHDDELTKLGSSALSQHIVSLTSTTYGLLTLDPPPSHQTPAPSTPPTPPTRFPHGSASPLPLSEPKSLWSEPEIINSWELMAGLDADSFRFKPFTIRDSISNKENSNPNLAKPIIQTRVSKPFSDVTKKHLLDKYERICPPNGENRVVVYTTSLRGIRKTFEACNGVKAVIDGAGFLICERDISMDRGFREELRELMKGKEREAIVPPRVFVKGKYIGGIEELSKMAEEGRLTELLEGLPKKRVGSVCEGCGDARFLPCFQCNGSCKLAMAVKEGMDQKQGRRIVVVHCPNCNENGLVVCPICS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1376318 1377259 - Bma010506.1 Bma14g00100 94081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00100 313 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 1 313 - -
Bma14g00100 313 CDD GRX_GRX_like 155 309 - -
Bma14g00100 313 SUPERFAMILY Thioredoxin-like 147 246 IPR036249 -
Bma14g00100 313 Gene3D Glutaredoxin 154 252 - -
Bma14g00100 313 Pfam Glutaredoxin 156 226 IPR002109 -
Bma14g00100 313 ProSiteProfiles Glutaredoxin domain profile. 144 252 - -
Bma14g00100 313 MobiDBLite consensus disorder prediction 44 64 - -
Bma14g00100 313 MobiDBLite consensus disorder prediction 38 74 - -
Bma14g00100 313 PANTHER OS02G0102000 PROTEIN 1 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00100 K17479 GRXCR1; glutaredoxin domain-containing cysteine-rich protein 1 - zju:107417110 413.305
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01030 Bma14g00100 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00033 Bma-Chr3:342537 Bma14g00100 Bma-Chr14:1376318 7.29E-47 transposed
Bma04g01576 Bma-Chr4:51712266 Bma14g00100 Bma-Chr14:1376318 7.53E-49 transposed
Bma10g00135 Bma-Chr10:1204787 Bma14g00100 Bma-Chr14:1376318 7.38E-42 transposed
Bma10g00228 Bma-Chr10:2066541 Bma14g00100 Bma-Chr14:1376318 1.44E-43 transposed
Bma14g01801 Bma-Chr14:38602477 Bma14g00100 Bma-Chr14:1376318 3.10E-45 transposed
Bma14g00100 Bma-Chr14:1376318 Bma07g01030 Bma-Chr7:41558366 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g251 . . . . . . Bma07g01030 Bma14g00100 . . . Cma15g01318 . Car15g01185 . . . . . . . . . . . . . . . . . . . . . . Csa05g00161 Chy09g01336 . Blo03g00800 . Bda07g00154 . . Bpe11g00372 . . . . Cmo15g01382 . . . . . . Bhi12g00082 . . Lac11g1913 Hepe06g1434 . Lcy12g1515 Cla01g00143 Cam01g0148 Cec01g0144 Cco01g0150 Clacu01g0143 Cmu01g0143 Cre09g2363 Lsi09g00134 . . Cme09g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011679 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00100 Bma_Chr14 FPKM 0.837589 0.688917 0.987741 1.108195 1.333164 0.446762 1.064373 0.689537 0.595145 0.58614