Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00116 ATGGATGATATGGGAGCGATTCATTTTGCTTCTCAAAAGGGACATTTAGATGTTGTTCGGGCTCTAGTTTCATTTGGGGGGTCTGTCAAAGCTTCTACTCGCAAAGGCATGACTCCATTACACTACGCCGTTCAAGGGTCTTATCTTGAGCTCGTGAAGTATTTGGTCAAGAAAGGTGGAAGTCTTACCACCAAGACTAAAACCGGGATGACTCCCCTTGATCTTGCTACCAATGAAGAAATCCGCTCCTTTTTGGAAGAGTCGGAACTATTGCCTAAGAAAGAAGATCTTAATGAGAAAAATAATGATGAAAATCCTGAGGCAAAACCATCGATTTCTGATAGAGAAGGGAGTTCTGGTGTCGGAATAACTGAGGCTGGAGTTGATGAACAGCCGGATGGCGAAAAGTTGAAGAGAAAGAACGATGAAGATGGAATGCAGGAAGCTTCTTCTGGACGAAAAAAGGCGAAAGTTTCCCTCAATCATCTTCTCAGTGCAGATGACACAGAAGCTGAAGAAAACTCCTGA 528 43.37 MDDMGAIHFASQKGHLDVVRALVSFGGSVKASTRKGMTPLHYAVQGSYLELVKYLVKKGGSLTTKTKTGMTPLDLATNEEIRSFLEESELLPKKEDLNEKNNDENPEAKPSISDREGSSGVGITEAGVDEQPDGEKLKRKNDEDGMQEASSGRKKAKVSLNHLLSADDTEAEENS 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1518408 1518935 - Bma010520.1 Bma14g00116 94097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00116 175 PANTHER - 1 173 - -
Bma14g00116 175 ProSiteProfiles Ankyrin repeat profile. 35 67 IPR002110 GO:0005515
Bma14g00116 175 MobiDBLite consensus disorder prediction 129 151 - -
Bma14g00116 175 SUPERFAMILY Ankyrin repeat 3 85 IPR036770 -
Bma14g00116 175 PANTHER ANKYRIN REPEAT PROTEIN 1 173 - -
Bma14g00116 175 MobiDBLite consensus disorder prediction 86 111 - -
Bma14g00116 175 MobiDBLite consensus disorder prediction 86 175 - -
Bma14g00116 175 Pfam Ankyrin repeats (3 copies) 7 86 IPR002110 GO:0005515
Bma14g00116 175 ProSiteProfiles Ankyrin repeat profile. 2 34 IPR002110 GO:0005515
Bma14g00116 175 SMART ANK_2a 2 31 IPR002110 GO:0005515
Bma14g00116 175 SMART ANK_2a 35 64 IPR002110 GO:0005515
Bma14g00116 175 Gene3D - 1 104 IPR036770 -
Bma14g00116 175 ProSiteProfiles Ankyrin repeat region circular profile. 35 67 - -
Bma14g00116 175 ProSiteProfiles Ankyrin repeat region circular profile. 2 31 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00116 - - - pop:18094063 204.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00116 Bma-Chr14:1518408 Bma04g00693 Bma-Chr4:7027189 1.33E-06 dispersed
Bma14g00116 Bma-Chr14:1518408 Bma13g00036 Bma-Chr13:438643 4.58E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g894 . . . . . . . Bma14g00116 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0531 . . . . . . . Blo03g00846 . Bda07g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013469 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00116 Bma_Chr14 FPKM 8.519251 11.65585 14.159906 15.595277 23.882097 22.980988 24.611799 25.658955 25.858957 27.58856