Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00118 ATGCAGGAGGAGTTTGAGGAGTATGCTGAGAAAGCGAAGACACTGCCGGAGACTACTACCAACGAGGACAAGCTTATTCTCTACGGCCTGTTCAAGCAATCTACTGTCGGACCGGTCAATACTAGCCGCCCTGGAATGTTCAACATGAGGGACAGAGCTAAGTGGGATGCATGGAAGGCTGTTGAAGGAAAATCGAAGGAGGAAGCTATGAATGATTATATCACCAAGGTGAAACAGTTGTTGGAGGGAGCTGGTATTTCT 261 47.89 MQEEFEEYAEKAKTLPETTTNEDKLILYGLFKQSTVGPVNTSRPGMFNMRDRAKWDAWKAVEGKSKEEAMNDYITKVKQLLEGAGIS 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1533852 1534279 - Bma030644 Bma14g00118 94099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00118 87 Gene3D - 1 87 IPR014352 -
Bma14g00118 87 CDD ACBP 1 82 IPR000582 GO:0000062
Bma14g00118 87 PANTHER ACYL-COA-BINDING PROTEIN-LIKE 1 84 - -
Bma14g00118 87 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 1 86 IPR000582 GO:0000062
Bma14g00118 87 ProSitePatterns Acyl-CoA-binding (ACB) domain signature. 19 37 IPR022408 -
Bma14g00118 87 PANTHER ACYL-COA-BINDING PROTEIN, ACBP 1 84 - -
Bma14g00118 87 PRINTS Acyl-coA-binding protein signature 2 17 IPR000582 GO:0000062
Bma14g00118 87 PRINTS Acyl-coA-binding protein signature 42 57 IPR000582 GO:0000062
Bma14g00118 87 PRINTS Acyl-coA-binding protein signature 63 80 IPR000582 GO:0000062
Bma14g00118 87 PRINTS Acyl-coA-binding protein signature 19 37 IPR000582 GO:0000062
Bma14g00118 87 SUPERFAMILY Acyl-CoA binding protein 1 83 IPR035984 GO:0000062
Bma14g00118 87 Pfam Acyl CoA binding protein 2 77 IPR000582 GO:0000062
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00118 K08762 DBI, ACBP; diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) - cpap:110812046 164.081
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g898 . . . . . . . Bma14g00118 Cmo06g00604 Cmo16g01265 . . . . . Cpe14g01008 . . . . . . . . Cla10g00097 Cam10g0095 Cec10g0100 Cco10g0101 Clacu10g0096 Cmu10g0943 Cre10g0357 Cone8ag0533 Cone12ag0535 . . . . . Cme06g02406 . . Bda07g00131 . . . . . . . . Cma06g00598 Cma16g01222 Car06g00532 Car16g01149 . . . . . . . . . . . . . . . . . Csa03g00101 Chy06g02204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008957 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00118 Bma_Chr14 FPKM 78.364983 76.847061 35.452652 31.879368 20.385386 17.561249 23.128756 1.049296 0.0 0.0