Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00154 GGCGCTGGACTGGCAAATCTGGGCAACACGTGTTTCATGAATTCAATTCTGCAGTGCATGACACATACCACATTGCTCGTGCAAGGTCTCCGGACTGCAGATCATTTTCAGATCTGTCAATGTGGGAATAAATATTTCTGCCTTTTCTGTGGTCTCCACGACCACATTGAACTTTCACTTTCTTCATCAGGAGGGGTCGTTTTGCCCCATAAACTTGTCGACAACTTGAACTTGTATCCTAAATCAAATATCTCATCTTATTTCGAGAAATTACAGCAGGAAGACGCCCATGAATTCCTGCAATGCTTGTTAGATAAACTCGGAGGACCTTGCTTGTATTTAATGGAAAACAAAAGAAGGTTGGCTTGTGAGAGTGATAACTTAGTGAAAAGGATCTTTGGTGGTCGTCTTATAAGCAAACTTCGCTGTTGCAATTGTGGGCATTTATCTGACAAGATTGAGCCTCTAATGGACCTGAGTCTGGAGATCGAAAATGTTGATTCTCTTTCGGGTGCTTTGGAATCTTTCACCAAAGTCGAAAAAATTGATGATCCGGAGATGAGATTTACATGTGAGAACTGCAGAGAAGTTGTGTCAATTGAGAAGCAGTTTATGCTCAACGAAGTTCCTTCAGTTGCTACCTTTCATTTGAAAAGATTCAAGAGTGATGGGATTGCTGTGGAGAAAATAAAAAAGCCTGTGAAATTTCCATTAGAGCTGGACTTGAAGCCATACACTTGGTCAACATGCGATACAGATGTTGAGCTCTGTTACGAACTATATGCTATCGTTGAGCATGTGGGAGAGGCATCTACTTCTGGACACTATATCAGCTTTGTTCGTCCTTCTCCGAATTCATGGTTTAGACTTGATGACTCCAAGGTTACTTTGGTCCCAGAAAACTACGTGTTGTCCCAGGAGGCATACATTCTCTTTTACGCAAAGAAGGGAACACCATGGGCGTGTACTTTAATGGAAGGTCAGAAGCCGAGGATTGCATTGCCCATGTCTGTGCCAGATGACTCAGGTCATCGAGAGCCAATGATTGATAATCGCAATGTTGATGAATCCACAGAATTTGGATGTGTTGTTCCTTCTCAGAGCTCAAGTCATCCTCTCTTGACCCAATCCTCTGGGGCAGTCGAAGAATTCGACAATAACTCGGGGCAAGATGCTTTAAAATCAGGTAATGAAGAAAATGAAGAGCATAGAAAGGTGGATGATAGTAGAGATAGGGATGAGACAGCAATTTTGGAGCCTCAGGCACGTCCTAAGCCTGAAAAACTTGCAAATACTGAGAGGCCAAGGAAGAAGGTGGTGGACAGCAGTGAGAAAAGAGAAGCTCAGGGGCCATTGAAGAAGGTGATGGACAATAGTGAGAAGAGAGAAGCCTTAAGATATGTTCAGAGGAGCATGCCTAGTGCAAGGGGAATGAAGTTTGTTGCTGCCATGCTTGAATGTCGTGGCGAAGGTTCGGGTGGTAAGGCAAGGAAGAGGAGAAGAACATCTCCTTGTAAGAAGTCTGGCTCCCCTAACACTCGCCGGAAGCTCCCCCATAATTCTGTTGCTCGGTTTGTGGCGGCTAGAAATTGA 1593 44.01 GAGLANLGNTCFMNSILQCMTHTTLLVQGLRTADHFQICQCGNKYFCLFCGLHDHIELSLSSSGGVVLPHKLVDNLNLYPKSNISSYFEKLQQEDAHEFLQCLLDKLGGPCLYLMENKRRLACESDNLVKRIFGGRLISKLRCCNCGHLSDKIEPLMDLSLEIENVDSLSGALESFTKVEKIDDPEMRFTCENCREVVSIEKQFMLNEVPSVATFHLKRFKSDGIAVEKIKKPVKFPLELDLKPYTWSTCDTDVELCYELYAIVEHVGEASTSGHYISFVRPSPNSWFRLDDSKVTLVPENYVLSQEAYILFYAKKGTPWACTLMEGQKPRIALPMSVPDDSGHREPMIDNRNVDESTEFGCVVPSQSSSHPLLTQSSGAVEEFDNNSGQDALKSGNEENEEHRKVDDSRDRDETAILEPQARPKPEKLANTERPRKKVVDSSEKREAQGPLKKVMDNSEKREALRYVQRSMPSARGMKFVAAMLECRGEGSGGKARKRRRTSPCKKSGSPNTRRKLPHNSVARFVAARN 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2138480 2140836 + Bma010561.1 Bma14g00154 94135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00154 530 MobiDBLite consensus disorder prediction 395 461 - -
Bma14g00154 530 Gene3D Cysteine proteinases 1 321 - -
Bma14g00154 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 433 - -
Bma14g00154 530 MobiDBLite consensus disorder prediction 489 530 - -
Bma14g00154 530 Pfam Ubiquitin carboxyl-terminal hydrolase 3 313 IPR001394 GO:0004843|GO:0016579
Bma14g00154 530 MobiDBLite consensus disorder prediction 383 461 - -
Bma14g00154 530 SUPERFAMILY Cysteine proteinases 2 315 IPR038765 -
Bma14g00154 530 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 2 316 IPR028889 -
Bma14g00154 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 3 18 IPR018200 GO:0004843|GO:0006511
Bma14g00154 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 258 276 IPR018200 GO:0004843|GO:0006511
Bma14g00154 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00154 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - qsu:112012452 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00442 Bma-Chr3:3364983 Bma14g00154 Bma-Chr14:2138480 2.11E-23 dispersed
Bma07g00221 Bma-Chr7:2626838 Bma14g00154 Bma-Chr14:2138480 2.97E-18 dispersed
Bma10g00146 Bma-Chr10:1262258 Bma14g00154 Bma-Chr14:2138480 7.23E-14 dispersed
Bma14g00154 Bma-Chr14:2138480 Bma15g01048 Bma-Chr15:42143707 2.84E-23 dispersed
Bma14g00154 Bma-Chr14:2138480 Bma13g00908 Bma-Chr13:39453922 2.38E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00154 Bma_Chr14 FPKM 0.0 0.0 0.0 0.248747 4.958196 6.219306 4.224691 0.0 0.0 0.0