Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00158 ATGGGGTCGTTGGGCAGTCCTAAAACTTGGATTCCTTACATGAACAGTAAGGATTGTTTGCAAGGATTTTGTAGCATTTACTGTCCGCAGTGGTGTTACATCATCTCCTCTCCTCCACCGCCGGTGGAATTTTCGGACGAAAATCACGGCCCTAATTTCTCTCCCCTTGTCGTTGCGATTATAGGAATTTTAGCCAGTGCTTTTCTGCTGGTAAGCTATTATACCATAATCTCCAAGTACTGCGAGGAATCGAATCGATCGGGGCGAAGAGAAAATGGTAATGTTAATGGAGAATTAGATGATAATTTGAATCTGAATTTACATCATCATGAACCTTGGCAAGCTTCCTCCAATGGCGTAGAAGAGGCTCTTATAAACTCCATTCCTGTCTGTAAGTACAAAAGAGGAGATGGATTGGTAGAAATTACAGAGTGTTCTGTTTGCTTAAGTGAGTTTGAAGAAGATGAAGAGTTCAGGCTTTTGCCCAAGTGTAGCCATGCATTTCATCTTCCTTGCATTGATAAATGGCTCAGAGCTCACTCCAACTGCCCTCTGTGCAGAGCTAACATTTTCTCTCTCTACAGTTCTTTGCCGCTTCATTCTCTCACATCCATTGAAAACCCACCTTCCGATGAACCAAATGCAGAAACCCACCTGGGAGATGAGAGAGAATCTATTGAAAATAGCTCAGAAAGACAAGATTCAGGGGATGAAATCAGGCAGAGGGATAGAGTTGGTGAGCTGGGAAATCCAAAAGAAGGAGATGTTATAATTGAAATCTCAGATGGAGGATTCAAACCCATTAGAAGGTCCGTTTCGCTGGATCATTCGAGCCGAAATCGCGACTTGGTCGCTCGGGTTTTGAACTCGGATAGAAAAGATGTAGAAGAGATTAGATCGTCCAAACAGCCGTCGGAGGAGGGTGGAGAGTTTGAGTTCAGTCACAAGAAATGGCTATTGGATTGTGTAGTTTCGCCGGTTCCGATGAAGAGATCGTTTTCCAGCGGCAGATTCCTTCTCGCTAGACACGGAGGAGGAAGTAGTGTTCTTCCCGTCTGA 1059 44.29 MGSLGSPKTWIPYMNSKDCLQGFCSIYCPQWCYIISSPPPPVEFSDENHGPNFSPLVVAIIGILASAFLLVSYYTIISKYCEESNRSGRRENGNVNGELDDNLNLNLHHHEPWQASSNGVEEALINSIPVCKYKRGDGLVEITECSVCLSEFEEDEEFRLLPKCSHAFHLPCIDKWLRAHSNCPLCRANIFSLYSSLPLHSLTSIENPPSDEPNAETHLGDERESIENSSERQDSGDEIRQRDRVGELGNPKEGDVIIEISDGGFKPIRRSVSLDHSSRNRDLVARVLNSDRKDVEEIRSSKQPSEEGGEFEFSHKKWLLDCVVSPVPMKRSFSSGRFLLARHGGGSSVLPV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2167625 2168683 + Bma010565.1 Bma14g00158 94139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00158 352 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 4 344 - -
Bma14g00158 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Bma14g00158 352 Pfam Ring finger domain 144 187 IPR001841 -
Bma14g00158 352 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Bma14g00158 352 MobiDBLite consensus disorder prediction 215 250 - -
Bma14g00158 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 344 IPR044675 -
Bma14g00158 352 SMART ring_2 145 186 IPR001841 -
Bma14g00158 352 MobiDBLite consensus disorder prediction 204 253 - -
Bma14g00158 352 SUPERFAMILY RING/U-box 124 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01189 Bma-Chr2:54008504 Bma14g00158 Bma-Chr14:2167625 2.63E-79 dispersed
Bma03g01542 Bma-Chr3:51159583 Bma14g00158 Bma-Chr14:2167625 1.81E-39 dispersed
Bma04g00744 Bma-Chr4:7997018 Bma14g00158 Bma-Chr14:2167625 3.06E-34 dispersed
Bma05g00966 Bma-Chr5:48106730 Bma14g00158 Bma-Chr14:2167625 1.08E-19 dispersed
Bma12g00489 Bma-Chr12:14446636 Bma14g00158 Bma-Chr14:2167625 1.21E-25 dispersed
Bma13g00255 Bma-Chr13:4018789 Bma14g00158 Bma-Chr14:2167625 4.66E-24 dispersed
Bma14g00158 Bma-Chr14:2167625 Bma14g01765 Bma-Chr14:37956137 9.31E-25 dispersed
Bma14g01782 Bma-Chr14:38373802 Bma14g00158 Bma-Chr14:2167625 5.65E-25 dispersed
Bma14g00158 Bma-Chr14:2167625 Bma05g01070 Bma-Chr5:49436002 8.32E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00158 - - mcha:111026146 373.629