Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00160 ATGCGTGAGAGGGATACTACGTCTTCGAAGACTGTGTGTGTAATGGACGCCTCTGGAACACTGGGCTCGAGCATTGTCAAGCGGCTTCTCCAGAGCGGCTACAATGTTCATGCTGCTGTTCAAAGCCATGGTCAGCTTTTAACCTTAGCTTGGGAATCGATGTTTAAAGGGTGTGATGAGAAGAAGCTGAAGATTTTCCATTCGGATCCCTTTGATTACCAGAGTATAATTGATGCCCTGAGAGGCTGTTCTGGCTTGTTTTATGTGTTTGAGCCTCCCCTAGACCATCCCACCTATGACGAATTCATGGCAGAAGTGGAGGTGAGAGCAGCACACAATGTAATAGAAGCATGCGCTCAAACCGAAACCATAGACAAAGTCGTTTTCACATCTTCTGTCACTGCAGTCATTTGGAGAGACGATCGCAATTCCGTTGCATCGGACTTGGACGAGCGTTTTTGGAGCGATTTCAGTTTTTGCCGTAAATTCAAGCTATGGCATGGTCTATCCAAGACATTAGCAGAGAGGAGTGCATGGGCATTAGCCATGGACAGAGGAGTAAATCTCGTGTCCATAAACGGAGGATTACTCATAACCTCCGATCTCACGATAGAAAACCCGTATTTAAAGGGGGCGGCCGAGATGTACGAAGACGGTTTATTTGTCACAGTCGATCTAAATTTCTTGGTCGATGCACACAGCTGTGTTTTTCAAGATACCTCGTCGTATGGACGCTATCTCTGCTTCAATCACGTCATCAACCGAAACAAAGACGCCATCGAGCTCGCTCGAAAATTGACTCCGTCAGCCTTGGCACTTCCGAGTATTGATGAAGATATGAGGATCATTCAACAAAGAATAAGCAATAAGAAACTTAACAAGTTAATGGTGGATCTCGAGGCTGGATCTCAACTGAGCTAA 921 45.82 MRERDTTSSKTVCVMDASGTLGSSIVKRLLQSGYNVHAAVQSHGQLLTLAWESMFKGCDEKKLKIFHSDPFDYQSIIDALRGCSGLFYVFEPPLDHPTYDEFMAEVEVRAAHNVIEACAQTETIDKVVFTSSVTAVIWRDDRNSVASDLDERFWSDFSFCRKFKLWHGLSKTLAERSAWALAMDRGVNLVSINGGLLITSDLTIENPYLKGAAEMYEDGLFVTVDLNFLVDAHSCVFQDTSSYGRYLCFNHVINRNKDAIELARKLTPSALALPSIDEDMRIIQQRISNKKLNKLMVDLEAGSQLS 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2176602 2178333 - Bma010567.1 Bma14g00160 94141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00160 306 CDD FR_SDR_e 12 297 - -
Bma14g00160 306 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 137 IPR002225 GO:0003854|GO:0006694|GO:0016616
Bma14g00160 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 281 IPR036291 -
Bma14g00160 306 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 5 303 - -
Bma14g00160 306 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 303 - -
Bma14g00160 306 Gene3D - 2 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00160 - - - mnt:21385456 446.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00925 Bma14g00160 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00530 Bma-Chr13:10862598 Bma14g00160 Bma-Chr14:2176602 7.98E-52 dispersed
Bma14g00160 Bma-Chr14:2176602 Bma14g01497 Bma-Chr14:30238426 4.37E-47 dispersed
Bma10g00370 Bma-Chr10:3467510 Bma14g00160 Bma-Chr14:2176602 8.18E-145 transposed
Bma14g00160 Bma-Chr14:2176602 Bma07g00925 Bma-Chr7:33532834 3.29E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g685 . . . . . . Bma07g00925 Bma14g00160 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0472 . . . . . . Blo03g00870 Blo19g00196 . Bda09g00737 Bpe08g00826 Bpe11g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00160 Bma_Chr14 FPKM 62.85421 71.818649 43.131805 41.507919 44.828079 45.792427 47.237919 15.842264 16.063862 15.306198