Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00175 AAAATGTCTGGGAATGGCCGTTGTTTTGTGGAGTGGAAGGAGCATTTTGTCTCACAAGAGCGAGGCAGCAGAGTGGTGCACTATTTTTTGAAGGATTCAAATGGGGTATCCATTCTTGCTGTTGTGGGCACTGAGAGGAGTATTAGACACATGTTCTATGTCGTTGCAGATGAATTTTTGCAAGCTTATGGCCCTGAAAGTTCTGTTCATAGTGGTTTTAAATGGAGATCTAGAAGAGAGGTTGTGGATTGGCTAACTTCTATGCTTTCTAAGCAGCATTTACATGGGGAGCATTCTGAACTGCTGAAATATAATTCTAATCGGTCAGTTGAAACTCTTCTGTTTTCAAAGAAGGGAGTAAGTGACTCACTCGACAATGTCCCTGATGACAAGATCTGTCGTGTGAGAGATTGTGATGGATCGGATTCTGACATTGTTTGGTCGGGCACTGCATGGATCTGTGGGAAGCAGCTTAAGCACTACCCTGAATTTTCCAGGAATGGAACTTCAATAGCGATTCAATCTTTTGTTTTTATCATGGCTAAGGGAGATAATCAGTACCTTGCTTATTTGGAGGATATGTATGAAGACAAAAGAGGCCAAAAAAAGGTCAAAGTAAGATGGTTTCACCATAGTCAGGAGGTGAAAGGGGCGATTCCTCTTCGAAATTCGCACCCAAAAGAAGTATTTATGACACCATATGCACAAACAATCAGTGCTGAGTGCGTTGATGGTCCGGCTGCGATCCTAACTCGAGAACATTATAAAAGATGCCTCGAGGCTTTCCCTCATGCTTTGTCCTGTAGAATCCATTTCTGTTATAGGCAGTTTAGGAGTAATAAATTGAAGCCTTTCAACTTGAGTAAACTGCGTGGCTATTTGAATCAGCCCATTCTCTCTTGTTTGGATCTCAGTGTCATCCAAAAACCGGATTTGGCATGTGATAGTTTAACTGTGGATGAAGATGCAGAGCTAACCCCAGATGTCTCTAAAAAAGTAGGAGCTAAGAGGAGGCGAAGCAGTAAAGGATGCGAGGAGTTTGACTTTGAAAACTCGAGAATTTTTAGCAAATGTCAGAAGATGGTCACAGATGAACAATGCAAAAGCTTTAAGTTTAGGCTATCTAACAGGAGAATGTTTTCTTGGAATCATGTTGAAATTAACAAAAAAATAGAGGTGTTATGTCAAGATAGCGGAATCCGGGGATGCTGGTTCAGATGTTCCATCTTGCGTCTATCGGGAAAACTAATTAGAGTTCGATATGATGATTTGGTAGATGAAGATGGTTCTGGCAATCTTGAGGAATGGATCCCAGCTTTTAAAATAGCTTTGCCTGACAAACTTGGCATGAGGCACTCTGGTCGTCCGACCATACGGCCGGCCCTCCAAGAACCAACCGAACTAGCTATCAAAATCGGTGTTGCTGTTGATGCTTGGTGGAGTGATGGCTGGTGGGAAGGAGTCATTACTGAAATTAACGACTTGGACAACAATCTCATGCATATTTTCTTGCCAGGCGAAAACTTATTCTTGGATATACCAAAAAAGGATCTTAGAGTTTCCAAAGATTGGTTGGGAGATTCCTGGACCGATATTGAAGCAAAGCCTGACATTCTTTTAGCCATATCTTCAATGGTTAGCTCCGACACCAAGCTCGCCATGTCCTCTAATACTGTTGAGGGTGTCAAATCTGGTAGTTTCGATACATCAAATGTCGAATTTGTTCCAACGGCAACTAAAAATAGTCACGATGATGGAAGCAATTCTCACGATAATAGCAAAAACGACAAAGATGACGAAGGCGAGGATAATAACGAGTCTAATATAGAAATAGATGCGTCCGAACTGCCTAGAGAGAACTGTACAGCAGGAGTTACGGAATTGGTAGCTTAA 1893 41.89 KMSGNGRCFVEWKEHFVSQERGSRVVHYFLKDSNGVSILAVVGTERSIRHMFYVVADEFLQAYGPESSVHSGFKWRSRREVVDWLTSMLSKQHLHGEHSELLKYNSNRSVETLLFSKKGVSDSLDNVPDDKICRVRDCDGSDSDIVWSGTAWICGKQLKHYPEFSRNGTSIAIQSFVFIMAKGDNQYLAYLEDMYEDKRGQKKVKVRWFHHSQEVKGAIPLRNSHPKEVFMTPYAQTISAECVDGPAAILTREHYKRCLEAFPHALSCRIHFCYRQFRSNKLKPFNLSKLRGYLNQPILSCLDLSVIQKPDLACDSLTVDEDAELTPDVSKKVGAKRRRSSKGCEEFDFENSRIFSKCQKMVTDEQCKSFKFRLSNRRMFSWNHVEINKKIEVLCQDSGIRGCWFRCSILRLSGKLIRVRYDDLVDEDGSGNLEEWIPAFKIALPDKLGMRHSGRPTIRPALQEPTELAIKIGVAVDAWWSDGWWEGVITEINDLDNNLMHIFLPGENLFLDIPKKDLRVSKDWLGDSWTDIEAKPDILLAISSMVSSDTKLAMSSNTVEGVKSGSFDTSNVEFVPTATKNSHDDGSNSHDNSKNDKDDEGEDNNESNIEIDASELPRENCTAGVTELVA 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2310756 2313649 + Bma010585.1 Bma14g00175 94156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00175 630 SMART agenet_At_2 468 526 IPR014002 -
Bma14g00175 630 SMART BAH_4 169 288 IPR001025 GO:0003682
Bma14g00175 630 ProSiteProfiles BAH domain profile. 169 288 IPR001025 GO:0003682
Bma14g00175 630 Pfam Agenet domain 389 460 IPR008395 -
Bma14g00175 630 PANTHER OS07G0607300 PROTEIN 5 605 - -
Bma14g00175 630 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 605 - -
Bma14g00175 630 Gene3D - 139 297 IPR043151 -
Bma14g00175 630 MobiDBLite consensus disorder prediction 584 601 - -
Bma14g00175 630 MobiDBLite consensus disorder prediction 577 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00175 - - - qsu:111986205 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01556 Bma-Chr1:35866395 Bma14g00175 Bma-Chr14:2310756 9.52E-161 dispersed
Bma01g00164 Bma-Chr1:1532913 Bma14g00175 Bma-Chr14:2310756 2.91E-104 transposed
Bma14g00175 Bma-Chr14:2310756 Bma14g00693 Bma-Chr14:7554472 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00175 Bma_Chr14 FPKM 0.0 0.173094 0.097685 0.201246 0.209317 0.0 0.30193 0.0 0.006493 0.0