Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00177 ATGAATTTCCAAAAATTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAAAAAAAAAAAAAAAAAGGAACTCAGCTTATCAAGTATAGTCGAAAAGGAAAGCCTAAGTTTTGCCCATTCAGAGTTTCTCCAGATGAAACAACATTGATTTGGTACTCTCATGGAGAAGAAAGAAATCTGAAGTTATCTTCCGTTGCACGAATTATCCCTGGACAGAGAACAGCCGTGTTTAGGAGATATCTACGCCCTGAGAAGGATTACTTGTCATTTTCACTTTTATACAAGAACGGTGAACGTTCACTTGATTTGATCTGCAAGGATAAAGCAGAGGCAGAGATCTGGTTTGCAGGTCTTAAGGCATTAATTTCATCTGGTCAACAACGTAGGCGTACTAAGAGTGAAATTTCATACCAGGATGGTCCTGAATCGCAAAATGGTCGTCCATTTGGTGCAAGTTTAGATTTCACTTCGAGCATAAATCGTGGAAGAGAGTCTATTGATTTAAGTTCTAGCGAATCTCCGTTGAATTTTGCAAGCTCAGATGTGGGTTCAGAACGTGTAAGTATGCAACTAAGAGCAAGTACTGGAGATGGTTTTCGTATTAGTGTATCAAGCACTCCAAGCTGTTCAAGTGGTGGATCTGGACCTGATGATATTGAATCACTAGGTGATGTGTATGTATGGGGTGAGATTTGGTCTGACATCGTACCTGATGGGTCTTCGAGTCCCATCTCTGCAAAATCTGATTTCCTGACTCCTAGACTCTTAGAGTCCAATGTTGTTCTTGATGTTCATCAAATAGCCTGTGGTGCCCGACATGTTGCTCTTGTGACTAGGCAGGGTGAAGTTTTCACTTGGGGAGAGGAATCTGGGGGTAGACTTGGTCATGGGAGTGATAGAAATCTCACTCGCCCCCATCTTGTTGAGTTTCTAGCAGTTAATAATGTAGATTTTGTTGCATGTGGTTATTACCATACCTGTGCTGTATCTAATTTGGGAGATTTATTCACTTGGGGTGATGGCACCCATAATGCTGGACTTCTTGGCCATGGAACCGATGTTAGTCACTGGATTCCAAAAAGAGTCTCTGGTCCTTTGGAAGGACTTCAAGTTTTGTCCATCGCATGTGGCACATGGCATTCAGCGTTAGCAACATCCAACGGAAAACTATTCACATTTGGTGATGGAACATATGGTGTTTTGGGCCATGGAGATAGGGAGAGCGTTCCATATCCTAGGGAGGTTCAATCATTGAACGGACTTAAGACTATTAAAGTAGCATGTGGAGTATGGCATACTGCTGCTATTGTAGAGGTTATGGGCCAGACTGGTTCAAATGTTTCATCTAGAAAGTTGTTCACTTGGGGAGATGGTGATAAATTTCGTTTGGGTCATGGAAGCAAAGAAACTTATCTTCTTCCCACATGCGTGTCTTCTCTCATAGATTACAACTTTCACCAGATAGCCTGCGGCCACACTATGACTATTGCGCTTACCACATCCGGTCATGTGTTTACGATGGGTGGGACTGCATATGGTCAGCTAGGTAACCCGAGTTCAGATGGTGTTGTACCCTGCTTGGTCCAGGATAGATTAGTAGGAGAATATGTTGAAGAAATATCATGTGGGGATTTTCATGTGGCTGTCCTCACATCAAGAAGTGAAGTATACACTTGGGGAAAAGGTGAAAATGGAAGATTAGGACATGGGGACACAGTGGATAGGAAGGCTCCGTTTCTTGTAGAAGCACTGAAAGATAGACATGTGAAAAGTGTATCTTGTGGCTCAAATTTCACTGCAAGTATATGCATTCATAAGTGGGTTTGTGGAGCAGACCAATCTGTTTGTTCAGGTTGTAGACAAGCATTTGGATTCACCCGGAAGAGGCATAACTGTTATAATTGTGGACTCGTGCACTGTAATGGTTGTAGCTCCAAAAAAGCATTGAAAGCTGCATTAGCTCCAACTCCAGGCAAACCACATCGTGTTTGCGATTCTTGCTATACAAAACTTAAAGCTGCTGAGGCTGGTCATGGTTCTGCAGTCAGCAGAAAGGTTACAGTACCTCGTCGTTCAGTAGATTACAAGGAAAGACCAGATAAAGAGGTAAGGTCGTCGAGACTTCTGTTGTCTCCCACCACAGAACCAGTCAAATACCTTGAGATTAAATCTAGAAAGCATGAGACTAGATCAGATTCTCCTTCTATGGTCCGAGCTTCGCAAGTTCCAGCACTCCAACAACTGAAAGATATTGCATTTCCTAGTTCGTTGAGCGCTCTTCAAAGTGCATTGAAGCCTTCAATGATTAAAACTCTAAAGCAGAAGAGTGAGCTTCAAGATGCTGAAATACGGAGACTAGACAGAAATGCCCGAGAAGCTGCTTCATTAGCTGAAGAAGAATCGTCAAAATCCAAAATAGCGAAGGAGCTAGTCAAGTCGATAGCGGATCAGTTGAAAGAGATGACAGAGAAGCTGCCCTCGGAGATTTCTGAAAGTGGAACTTTTAAAACATTGCACGCGCAAGCGGAAGTGTTTCTAAAGATGAACAGAGCATCTGGAACTTTCTCTCCACCTGCCACCTTTGAAACTGACCATCAAAATACTCCAACCAATATCATTGGCCACTCGGTTGATGAGTCAATCAAACGAATGGATATTCATTTGAACTTTCAGGAAGACAAGAGAGCTGATGCAAATATCAGACAACCTACTCCCCCACACAGCCCAGACAATGGTTCAAGATCACCTGAATCTGCAACATTGAAGGATGGCGAACGGCAAGTCATTGAACAGTTTGAACCTGGCGTTTACGTAACTTTGGTTGTCCTTAATAATGGTACGAAGATTTTCAAGCGAGTCAGATTCAGTAAACGAAAGTTTGCTGAGCACCAGGCAGAAGACTGGTGGAATAGAAATAAAGACATGTTGCTAAGGAGATACAGCCCAACAATGACGAGTTCTACTCCAAAGGATTCACCTAAGGCACCGACTGAGGAAGCTGACGAGGCAGCATCATCGTCCCAAACATAG 3114 41.33 MNFQKFFFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQKKKKKGTQLIKYSRKGKPKFCPFRVSPDETTLIWYSHGEERNLKLSSVARIIPGQRTAVFRRYLRPEKDYLSFSLLYKNGERSLDLICKDKAEAEIWFAGLKALISSGQQRRRTKSEISYQDGPESQNGRPFGASLDFTSSINRGRESIDLSSSESPLNFASSDVGSERVSMQLRASTGDGFRISVSSTPSCSSGGSGPDDIESLGDVYVWGEIWSDIVPDGSSSPISAKSDFLTPRLLESNVVLDVHQIACGARHVALVTRQGEVFTWGEESGGRLGHGSDRNLTRPHLVEFLAVNNVDFVACGYYHTCAVSNLGDLFTWGDGTHNAGLLGHGTDVSHWIPKRVSGPLEGLQVLSIACGTWHSALATSNGKLFTFGDGTYGVLGHGDRESVPYPREVQSLNGLKTIKVACGVWHTAAIVEVMGQTGSNVSSRKLFTWGDGDKFRLGHGSKETYLLPTCVSSLIDYNFHQIACGHTMTIALTTSGHVFTMGGTAYGQLGNPSSDGVVPCLVQDRLVGEYVEEISCGDFHVAVLTSRSEVYTWGKGENGRLGHGDTVDRKAPFLVEALKDRHVKSVSCGSNFTASICIHKWVCGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCNGCSSKKALKAALAPTPGKPHRVCDSCYTKLKAAEAGHGSAVSRKVTVPRRSVDYKERPDKEVRSSRLLLSPTTEPVKYLEIKSRKHETRSDSPSMVRASQVPALQQLKDIAFPSSLSALQSALKPSMIKTLKQKSELQDAEIRRLDRNAREAASLAEEESSKSKIAKELVKSIADQLKEMTEKLPSEISESGTFKTLHAQAEVFLKMNRASGTFSPPATFETDHQNTPTNIIGHSVDESIKRMDIHLNFQEDKRADANIRQPTPPHSPDNGSRSPESATLKDGERQVIEQFEPGVYVTLVVLNNGTKIFKRVRFSKRKFAEHQAEDWWNRNKDMLLRRYSPTMTSSTPKDSPKAPTEEADEAASSSQT 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2326765 2333975 + Bma010588.1 Bma14g00177 94158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00177 1037 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 454 464 IPR000408 -
Bma14g00177 1037 Gene3D - 45 160 IPR011993 -
Bma14g00177 1037 Pfam Transcription factor regulating root and shoot growth via Pin3 953 1008 IPR013591 -
Bma14g00177 1037 SUPERFAMILY PH domain-like 48 150 - -
Bma14g00177 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 706 IPR013083 -
Bma14g00177 1037 MobiDBLite consensus disorder prediction 159 180 - -
Bma14g00177 1037 MobiDBLite consensus disorder prediction 913 928 - -
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Bma14g00177 1037 SUPERFAMILY FYVE/PHD zinc finger 634 702 IPR011011 -
Bma14g00177 1037 Pfam FYVE zinc finger 634 700 IPR000306 GO:0046872
Bma14g00177 1037 MobiDBLite consensus disorder prediction 932 946 - -
Bma14g00177 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 361 411 IPR000408 -
Bma14g00177 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Bma14g00177 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 583 629 IPR000408 -
Bma14g00177 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 480 526 IPR000408 -
Bma14g00177 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 529 578 IPR000408 -
Bma14g00177 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 415 464 IPR000408 -
Bma14g00177 1037 Pfam Transcription factor BRX N-terminal domain 827 862 IPR027988 -
Bma14g00177 1037 Gene3D - 228 476 IPR009091 -
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Bma14g00177 1037 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 43 1008 - -
Bma14g00177 1037 Coils Coil 797 817 - -
Bma14g00177 1037 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Bma14g00177 1037 CDD PH_PLC_plant-like 51 151 - -
Bma14g00177 1037 SMART fyve_4 632 701 IPR000306 GO:0046872
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 251 308 IPR000408 -
Bma14g00177 1037 ProSiteProfiles PH domain profile. 1 151 IPR001849 -
Bma14g00177 1037 ProSiteProfiles BRX domain profile. 954 1009 IPR013591 -
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Bma14g00177 1037 MobiDBLite consensus disorder prediction 913 955 - -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 292 305 IPR000408 -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Bma14g00177 1037 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Bma14g00177 1037 Coils Coil 44 50 - -
Bma14g00177 1037 MobiDBLite consensus disorder prediction 1008 1037 - -
Bma14g00177 1037 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 43 1008 - -
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Bma14g00177 1037 SUPERFAMILY RCC1/BLIP-II 250 635 IPR009091 -
Bma14g00177 1037 Gene3D - 477 645 IPR009091 -
Bma14g00177 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00177 - - - qsu:111991602 1422.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02357 Bma-Chr1:81264624 Bma14g00177 Bma-Chr14:2326765 6.08E-07 dispersed
Bma07g01382 Bma-Chr7:49585386 Bma14g00177 Bma-Chr14:2326765 5.31E-09 dispersed
Bma14g00177 Bma-Chr14:2326765 Bma14g00757 Bma-Chr14:8409331 5.70E-24 dispersed
Bma14g00177 Bma-Chr14:2326765 Bma04g00032 Bma-Chr4:355715 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g589 . . . . . . . . . . Cma01g01108 Cma09g00978 Car01g00979 . Sed05g3441 . Cpe02g00793 Bhi09g01704 Tan01g3135 Cmetu01g0339 . Hepe01g1242 Mch11g1222 . . . . . . . . . . . . Lsi02g01873 Csa07g01001 . . . . . . Bpe11g00560 . . Bma14g00177 . Cmo01g01153 Cmo09g00977 . . . . . . . . . . . . . Cla09g01038 Cam09g1093 Cec09g1093 Cco09g1115 . . . . . Chy01g01065 Cme01g00989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005381 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00177 Bma_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0